A finding of potential coexisting bacteria and characterization of the bacterial communities in the fruiting body of Sarcodon aspratus

Benucci GMN, Bonito GM (2016) The truffle microbiome: species and geography effects on bacteria associated with fruiting bodies of Hypogeous Pezizales. Microb Ecol 72:4–8. https://doi.org/10.1007/s00248-016-0755-3

Article  PubMed  Google Scholar 

Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Gregory Caporaso J (2018) Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome 6:90

Article  PubMed  PubMed Central  Google Scholar 

Chao A (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11:265–270. Retrieved January 2024. http://www.jstor.org/stable/4615964

Chen FC, Motoda T, Kamei I, Kijidani Y (2023) Characterization of microbial communities during Grifola frondosa (maitake) wood log cultivation. J Wood Sci 69:39. https://doi.org/10.1186/s10086-023-02111-3

Article  CAS  Google Scholar 

Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Cons 61:1–10

Article  Google Scholar 

Ge W, Zhang ZY, Dong CB, Han YF, Deshmukh SK, Liang ZQ (2021) Bacterial community analysis and potential functions of core taxa in different parts of the fungus Cantharellus cibarius. Pol J Microbiol 70:373–385. https://doi.org/10.33073/pjm-2021-035

Ge W, Ren Y, Dong C, Shao Q, Bai Y, He Z, Yao T, Zhang Y, Zhu G, Deshmukh SK, Han Y (2023) New perspective: symbiotic pattern and assembly mechanism of Cantharellus cibarius-associated bacteria. Front Microbiol 14:1074468. https://doi.org/10.3389/fmicb.2023.1074468

Article  PubMed  PubMed Central  Google Scholar 

Gehlenborg N (2019) UpSetR: a more scalable alternative to Venn and Euler diagrams for visualizing intersecting sets. Retrieved January 2024. https://CRAN.R-project.org/package=UpSetR

Gohar D, Pent M, Põldmaa K, Bahram M (2020) Bacterial community dynamics across developmental stages of fungal fruiting bodies. FEMS Microbiol Ecol 96:fiaa175. https://doi.org/10.1093/femsec/fiaa175

Article  CAS  PubMed  Google Scholar 

Kiyoto M, Suzuki H, Hara T, Yagi Y, Cho NS, Aoyama M (2005) Moderate angiotensin-converting enzyme (ACE) inhibitor from the fruit body of Sarcodon aspratus. Mushroom Sci Biotechnol 13:189–194

Google Scholar 

Kolde R (2019) pheatmap: pretty heatmaps. Retrieved January 2024. https://CRAN.R-project.org/package=pheatmap

Liu Y, Sun Q, Li J, Lian B (2018) Bacterial diversity among the fruit bodies of ectomycorrhizal and saprophytic fungi and their corresponding hyphosphere soils. Sci Rep 8:11672. https://doi.org/10.1038/s41598-018-30120-6

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu D, Perez-Moreno J, He X, Garibay-Orijel R, Yu F (2021a) Truffle microbiome is driven by fruit body compartmentalization rather than soils conditioned by different host trees. mSphere 6:e0003921. https://doi.org/10.1128/mSphere.00039-21

Article  PubMed  Google Scholar 

Liu D, Perez-Moreno J, Zhang P, Wang R, Chater CCC, Yu F (2021b) Distinct compartmentalization of microbial community and potential metabolic function in the fruiting body of Tricholoma matsutake. J Fungi 7:586. https://doi.org/10.3390/jof7080586

Article  CAS  Google Scholar 

Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228–8235

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lozupone CA, Hamady M, Kelley ST, Knight R (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73:1576–1585

Article  CAS  PubMed  PubMed Central  Google Scholar 

Napitupulu TP, Ayudhya SPN, Aimi T, Shimomura N (2022) Mycelial growth-promoting potential of extracellular metabolites of Paraburkholderia spp. isolated from Rhizopogon roseolus Sporocarp. J Pure Appl Microbiol 16:1154–1166. https://doi.org/10.22207/JPAM.16.2.43

Article  Google Scholar 

Oh SY, Kim M, Eimes JA, Lim YW (2018) Effect of fruiting body bacteria on the growth of Tricholoma matsutake and its related molds. PLoS ONE 13:e0190948. https://doi.org/10.1371/journal.pone.0190948

Article  CAS  PubMed  PubMed Central  Google Scholar 

Parks DH, Tyson GW, Hugenholtz P, Beiko RG (2014) STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics 30:3123–3124

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pent M, Põldmaa K, Bahram M (2017) Bacterial communities in boreal forest mushrooms are shaped both by soil parameters and host identity. Front Microbiol 8:836. https://doi.org/10.3389/fmicb.2017.00836

Article  PubMed  PubMed Central  Google Scholar 

Pent M, Bahram M, Põldmaa K (2020) Fruitbody chemistry underlies the structure of endofungal bacterial communities across fungal guilds and phylogenetic groups. ISME J 14:2131–2141. https://doi.org/10.1038/s41396-020-0674-7

Article  PubMed  PubMed Central  Google Scholar 

Pielou E (1966) The measurement of diversity in different types of biological collections. J Theor Biol 13:131–144

Article  Google Scholar 

Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C (2011) Metagenomic biomarker discovery and explanation. Genome Biol 12:R60. https://doi.org/10.1186/gb-2011-12-6-r60

Article  PubMed  PubMed Central  Google Scholar 

Shannon CE, Weaver W (1949) The mathematical theory of communication. University of Illinois

Splivallo R, Deveau A, Valdez N, Kirchhoff N, Frey-Klett P, Karlovsky P (2015) Bacteria associated with truffle-fruiting bodies contribute to truffle aroma. Environ Microbiol 17:2647–2660. https://doi.org/10.1111/1462-2920.12521

Article  PubMed  Google Scholar 

Tateishi K, Hosono T, Shimazu S, Fujimoto M (2000) Anti-allergenic properties of the fruiting bodies of Sarcodon aspratus. Nippon Shokuhin Kagaku Kogaku Kaishi 47:281–286

Article  CAS  Google Scholar 

Xia Y, He R, Xu W, Zhang J (2023) The Zoige pioneer plant Leymus secalinus has different endophytic bacterial community structures to adapt to environmental conditions. PeerJ 11:e15363. https://doi.org/10.7717/peerj.15363

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yamada A, Furukawa F, Yamanaka T (2017) Cultivation of edible ectomycorrhizal mushrooms in Japan. Rev Fitotec Mex 40:379–389

Google Scholar 

Yu FM, Jayawardena RS, Thongklang N, Lv ML, Zhu XT, Zhao Q (2022) Morel production associated with soil nitrogen-fixing and nitrifying microorganisms. J Fungi 8:299. https://doi.org/10.3390/jof8030299

Article  CAS  Google Scholar 

留言 (0)

沒有登入
gif