Alén, C., & Sonenshein, A. L. (1999). Bacillus subtilis aconitase is an RNA-binding protein. Proceedings of the National Academy of Sciences of the United States of America, 96, 10412–10417.

Article  PubMed  PubMed Central  Google Scholar 

Baek, Y. U., Li, M., & Davis, D. A. (2008). Candida albicans ferric reductases are differentially regulated in response to distinct forms of iron limitation by the Rim101 and CBF transcription factors. Eukaryotic Cell, 7, 1168–1179.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Banerjee, S., Nandyala, A. K., Raviprasad, P., Ahmed, N., & Hasnain, S. E. (2007). Iron-dependent RNA-binding activity of Mycobacterium tuberculosis aconitase. Journal of Bacteriology, 189, 4046–4052.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Beinert, H., Kennedy, M. C., & Stout, C. D. (1996). Aconitase as ironminus signSulfur Protein, Enzyme, and Iron-Regulatory Protein. Chemical Reviews, 96, 2335–2374.

Article  CAS  PubMed  Google Scholar 

Benjamin, J. A., & Massé, E. (2014). The iron-sensing aconitase B binds its own mRNA to prevent sRNA-induced mRNA cleavage. Nucleic Acids Research, 42, 10023–10036.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114–2120.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Boukouris, A. E., Zervopoulos, S. D., & Michelakis, E. D. (2016). Metabolic enzymes moonlighting in the nucleus: Metabolic regulation of gene transcription. Trends in Biochemical Sciences, 41, 712–730.

Article  CAS  PubMed  Google Scholar 

Buschlen, S., Amillet, J. M., Guiard, B., Fournier, A., Marcireau, C., & Bolotin-Fukuhara, M. (2003). The S. cerevisiae HAP complex, a key regulator of mitochondrial function, coordinates nuclear and mitochondrial gene expression. Comparative and Functional Genomics, 4, 37–46.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Castello, A., Hentze, M. W., & Preiss, T. (2015). Metabolic enzymes enjoying new partnerships as RNA-binding proteins. Trends in Endocrinology and Metabolism, 26, 746–757.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cho, S. Y., Jung, S. J., Kim, K. D., & Roe, J. H. (2021). Non-mitochondrial aconitase regulates the expression of iron-uptake genes by controlling the RNA turnover process in fission yeast. Journal of Microbiology, 59, 1075–1082.

Article  CAS  PubMed  Google Scholar 

Dupuy, J., Volbeda, A., Carpentier, P., Darnault, C., Moulis, J. M., & Fontecilla-Camps, J. C. (2006). Crystal structure of human iron regulatory protein 1 as cytosolic aconitase. Structure, 14, 129–139.

Article  CAS  PubMed  Google Scholar 

Forsburg, S. L., & Guarente, L. (1989). Identification and characterization of HAP4: A third component of the CCAAT-bound HAP2/HAP3 heteromer. Genes & Development, 3, 1166–1178.

Article  CAS  Google Scholar 

Forsburg, S. L., & Rhind, N. (2006). Basic methods for fission yeast. Yeast, 23, 173–183.

Article  CAS  PubMed  Google Scholar 

Gourley, B. L., Parker, S. B., Jones, B. J., Zumbrennen, K. B., & Leibold, E. A. (2003). Cytosolic aconitase and ferritin are regulated by iron in Caenorhabditis elegans. Journal of Biological Chemistry, 278, 3227–3234.

Article  CAS  PubMed  Google Scholar 

Gray, N. K., Pantopoulos, K., Dandekar, T., Ackrell, B. A., & Hentze, M. W. (1996). Translational regulation of mammalian and Drosophila citric acid cycle enzymes via iron-responsive elements. Proceedings of the National Academy of Sciences of the United States of America, 93, 4925–4930.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gsaller, F., Hortschansky, P., Beattie, S. R., Klammer, V., Tuppatsch, K., Lechner, B. E., Rietzschel, N., Werner, E. R., Vogan, A. A., Chung, D., et al. (2014). The Janus transcription factor HapX controls fungal adaptation to both iron starvation and iron excess. The EMBO Journal, 33, 2261–2276.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jeffery, C. J. (2015). Why study moonlighting proteins? Frontiers in Genetics, 6, 211.

Article  PubMed  PubMed Central  Google Scholar 

Jeffery, C. J. (2020). Enzymes, pseudoenzymes, and moonlighting proteins: Diversity of function in protein superfamilies. The FEBS Journal, 287, 4141–4149.

Article  CAS  PubMed  Google Scholar 

Johnson, D. C., Cano, K. E., Kroger, E. C., & McNabb, D. S. (2005). Novel regulatory function for the CCAAT-binding factor in Candida albicans. Eukaryotic Cell, 4, 1662–1676.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jung, S. J., Choi, Y., Lee, D., & Roe, J. H. (2019). Nuclear aconitase antagonizes heterochromatic silencing by interfering with Chp1 binding to DNA. Biochemical and Biophysical Research Communications, 516, 806–811.

Article  CAS  PubMed  Google Scholar 

Jung, S. J., Seo, Y., Lee, K. C., Lee, D., & Roe, J. H. (2015). Essential function of Aco2, a fusion protein of aconitase and mitochondrial ribosomal protein bL21, in mitochondrial translation in fission yeast. FEBS Letters, 589, 822–828.

Article  CAS  PubMed  Google Scholar 

Jung, W. H., Saikia, S., Hu, G., Wang, J., Fung, C. K., D’Souza, C., White, R., & Kronstad, J. W. (2010). HapX positively and negatively regulates the transcriptional response to iron deprivation in Cryptococcus neoformans. PLoS Pathogens, 6, e1001209.

Article  PubMed  PubMed Central  Google Scholar 

Kim, D., Paggi, J. M., Park, C., Bennett, C., & Salzberg, S. L. (2019). Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nature Biotechnology, 37, 907–915.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kim, E. J., Cho, Y. J., Chung, W. H., & Roe, J. H. (2020). The role of Rsv1 in the transcriptional regulation of genes involved in sugar metabolism for long-term survival. The FEBS Journal, 287, 878–896.

Article  CAS  PubMed  Google Scholar 

Klausner, R. D., & Rouault, T. A. (1993). A double life: Cytosolic aconitase as a regulatory RNA binding protein. Molecular Biology of the Cell, 4, 1–5.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liao, Y., Smyth, G. K., & Shi, W. (2014). featureCounts: An efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 30, 923–930.

Article  CAS  PubMed  Google Scholar 

Lind, M. I., Missirlis, F., Melefors, O., Uhrigshardt, H., Kirby, K., Phillips, J. P., Söderhäll, K., & Rouault, T. A. (2006). Of two cytosolic aconitases expressed in Drosophila, only one functions as an iron-regulatory protein. The Journal of Biological Chemistry, 281, 18707–18714.

Article  CAS  PubMed  Google Scholar 

Liu, Z., & Butow, R. A. (2006). Mitochondrial retrograde signaling. Annual Review of Genetics, 40, 159–185.

Article  CAS  PubMed  Google Scholar 

Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15, 550.

Article  PubMed  PubMed C