ALS shows complex genetic inheritance patterns. In about 5% to 10% of cases, there is a family history of ALS or a related condition such as frontotemporal dementia in a first or second degree relative, and for about 80% of such people a pathogenic gene variant can be identified. Such variants are also seen in people with no family history because of factor influencing the expression of genes, such as age. Genetic susceptibility factors also contribute to risk, and the heritability of ALS is between 40% and 60%. The genetic variants influencing ALS risk include single base changes, repeat expansions, copy number variants, and others. Here we review what is known of the genetic landscape and architecture of ALS.
Section snippetsMendelian risk genes and familial ALSThere is no doubt that ALS has a genetic component. Research is now focussed on identifying the nature of the genetic contribution, and its extent. Does every person with ALS have a genetic predisposition, with the only distinction being the size of the effect, or do some people develop ALS with no apparent genetic component at all? In this chapter, we will explore the genetics of ALS, what is currently known, and what remains to be answered.
ALS is commonly categorized as familial or sporadic,
Genetic testingThe identification of ALS gene variants helps us to understand disease mechanisms and thereby potentially identify new treatments. It may also reveal diagnostic, target engagement, prognostic, stage or treatment response biomarkers. However, understanding ALS genetics also has important consequences for individuals. The most straightforward is that finding an ALS gene variant in a family with multiple affected individuals provides a means by which people at risk may be identified if they wish.
Glossary of termsPhenotypeAny characteristic of an individual, but usually taken to mean characteristics resulting from a genotype.
GenotypeThe nucleotides at a specific genomic position (could be identical to the reference genome or could be a variant).
Locus (plural: loci)A genetic address may be defined by a gene name, an ID number (often beginning rs) or a chromosome number and base pair position, accompanied by the specific build of genome being referenced.
PenetranceThe probability of a phenotype given a
References (80)A.E. Renton et al.A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTDNeuron
(2011)
S. Richards et al.Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular PathologyGenetics in Medicine: Official Journal of the American College of Medical Genetics
(2015)
A.L. Savage et al.Characterisation of retrotransposon insertion polymorphisms in whole genome sequencing data from individuals with amyotrophic lateral sclerosisGene
(2022)
A. Shatunov et al.Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: A genome-wide association studyLancet Neurology
(2010)
D.C. Thomas et al.Recent developments in genomewide association scans: A workshop summary and reviewAmerican Journal of Human Genetics
(2005)
J.L. WeberHuman DNA polymorphisms and methods of analysisCurrent Opinion in Biotechnology
(1990)
H.J. Westeneng et al.Prognosis for patients with amyotrophic lateral sclerosis: Development and validation of a personalised prediction modelLancet Neurology
(2018)
O. Abel et al.ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis geneticsHuman Mutation
(2012)
K.B. Ahmeti et al.Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1Neurobiology of Aging
(2013)
A. Al Khleifat et al.Telomere length analysis in amyotrophic lateral sclerosis using large-scale whole genome sequence dataFrontiers in Cellular Neuroscience
(2022)
A. Al Khleifat et al.Telomere length is greater in ALS than in controls: A whole genome sequencing studyAmyotrophic Lateral Sclerosis and Frontotemporal Degeneration
(2019)
A. Al Khleifat et al.Structural variation analysis of 6,500 whole genome sequences in amyotrophic lateral sclerosisnpj Genomic Medicine
(2022)
A. Al-Chalabi et al.Finding a treatment for ALS – Will gene editing cut it?The New England Journal of Medicine
(2018)
A. Al-Chalabi et al.An estimate of amyotrophic lateral sclerosis heritability using twin dataJournal of Neurology, Neurosurgery, and Psychiatry
(2010)
A. Al-Chalabi et al.Modelling the effects of penetrance and family size on rates of sporadic and familial diseaseHuman Heredity
(2011)
A. Al-ChalabiPerspective: Don’t keep it in the familyNature
(2017)
P.M. Andersen et al.Clinical genetics of amyotrophic lateral sclerosis: What do we really know?Nature Reviews Neurology
(2011)
W.D. Andrews et al.Detection of reverse transcriptase activity in the serum of patients with motor neurone diseaseJournal of Medical Virology
(2000)
J.M. Bland et al.Multiple significance tests: The Bonferroni methodBMJ (Clinical Research ed.)
(1995)
H.M. Blauw et al.A large genome scan for rare CNVs in amyotrophic lateral sclerosisHuman Molecular Genetics
(2010)
A.L. Brown et al.TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13ANature
(2022)
S. Byrne et al.Absence of consensus in diagnostic criteria for familial neurodegenerative diseasesJournal of Neurology, Neurosurgery, and Psychiatry
(2012)
S. Byrne et al.Familial aggregation in amyotrophic lateral sclerosisAnnals of Neurology
(2010)
S. Byrne et al.Aggregation of neurologic and neuropsychiatric disease in amyotrophic lateral sclerosis kindreds: A population-based case-control cohort study of familial and sporadic amyotrophic lateral sclerosisAnnals of Neurology
(2013)
A. Chio et al.The multistep hypothesis of ALS revisited: The role of genetic mutationsNeurology
(2018)
D. CostainSimpson’s paradoxThe British Journal of Psychiatry: The Journal of Mental Science
(1979)
S. Cronin et al.Analysis of genome-wide copy number variation in Irish and Dutch ALS populationsHuman Molecular Genetics
(2008)
A. Derkach et al.Robust and powerful tests for rare variants using Fisher’s method to combine evidence of association from two or more complementary testsGenetic Epidemiology
(2013)
S.P. Dickson et al.Rare variants create synthetic genome-wide associationsPLoS Biology
(2010)
A.C. Elden et al.Ataxin-2 intermediate-length polyglutamine expansions are associated with increased risk for ALSNature
(2010)
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