Serena Fraraccio & Stephen Wandro

Present address: Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA

Gregory D. Sepich-Poore & Sandrine Miller-Montgomery

Present address: Micronoma, San Diego, CA, USA

Gregory D. Sepich-Poore

Present address: Feinberg School of Medicine, Northwestern University, Chicago, IL, USA

Qiyun Zhu

Present address: School of Life Sciences, Arizona State University, Tempe, AZ, USA

Tomasz Kosciolek

Present address: Malopolska Centre of Biotechnology, Jagiellonian University in Kraków, Kraków, Poland

Stefan Janssen

Present address: Algorithmic Bioinformatics, Department of Biology and Chemistry, Justus Liebig University Gießen, Gießen, Germany

These authors contributed equally: Gregory D. Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione.

Department of Bioengineering, University of California San Diego, La Jolla, CA, USA

Gregory D. Sepich-Poore, Sandrine Miller-Montgomery & Rob Knight

Department of Pediatrics, University of California San Diego, La Jolla, CA, USA

Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, Tomasz Kosciolek, Stefan Janssen, Se Jin Song & Rob Knight

Clarity Genomics, Antwerp, Belgium

Evguenia Kopylova

Department of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, USA

George Austin

Program for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA

George Austin & Tal Korem

Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA

Carolina Carpenter, Se Jin Song, Sandip Pravin Patel, Austin D. Swafford & Rob Knight

Department of Animal Sciences, Colorado State University, Fort Collins, CO, USA

Jessica L. Metcalf

Department of Medicine, University of California San Diego, La Jolla, CA, USA

Jad Kanbar

Department of Psychiatry, University of California San Diego, La Jolla, CA, USA

Robert Heaton

Moores Cancer Center, University of California San Diego Health, La Jolla, CA, USA

Rana Mckay & Sandip Pravin Patel

Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA

Tal Korem

Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA

Rob Knight

Micronoma, San Diego, CA, USA

Serena Fraraccio & Stephen Wandro