Psychromicrobium Xiongbiense sp. nov., an Actinobacterium Isolated from Forest Soil

Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium Silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67(3):640–645. https://doi.org/10.1099/ijsem.0.001677

Article  CAS  PubMed  Google Scholar 

Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M, Affiliations V (2020) List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 70(11):5607–5612. https://doi.org/10.1099/ijsem.0.004332

Article  PubMed  PubMed Central  Google Scholar 

Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium Silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67(3):640–645. https://doi.org/10.1099/ijsem.0.001677

Article  CAS  PubMed  Google Scholar 

Kiran S, Schumann P, Busse HJ, Spröer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake. Int J Syst Evol Microbiol 68(11):3416–3423. https://doi.org/10.1099/ijsem.0.002997

Article  CAS  PubMed  Google Scholar 

Xu CH, Chen G, Liu Y, Xiao W, Cui XL, Ding ZG, Liu WH, Wang YX (2020) Azospirillum aestuarii sp. nov., a novel nitrogen-fixing and aerobic denitrifying bacteria isolated from an estuary of a freshwater river. Curr Microbiol 80(4):113. https://doi.org/10.1007/s00284-023-03213-3

Article  CAS  Google Scholar 

Yin YL, Li FL, Wang L (2022) Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China. Arch Microbiol 204:466. https://doi.org/10.1007/s00203-022-03032-3

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tarrand JJ, Gröschel DH (1982) Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16(4):772–774. https://doi.org/10.1128/jcm.16.4.772-774

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huang JR, Han MX, Fang BZ, Yang J, Xiao HY, Zhang XY, Han JB, Yu DM, Jiang HC, Li WJ (2021) Aquiflexum lacus sp. nov., isolated from a lake sediment sample. Arch Microbiol 203:2911–2917. https://doi.org/10.1007/s00203-021-02280-z

Article  CAS  PubMed  Google Scholar 

An DF, Jiang LQ, Zhang K, Li GD, Wang XY, Jiang MG, Lang L, Wang LS, Imhoff JF, Jiang CL, Jiang Y (2021) Glaciibacter flavus sp. nov., isolated from a lichen sample. Arch Microbiol 203(5):2439–2444. https://doi.org/10.1007/s00203-021-02247-0

Article  CAS  PubMed  Google Scholar 

Máté R, Kutasi J, Bata-Vidács I, Kosztik, Kukolya J, Tóth E, Bóka K, Táncsics A, Kovács G, Nagy I, Tóth Á (2022) Flavobacterium hungaricum sp. nov. a novel soil inhabitant, cellulolytic bacterium isolated from plough field. Arch Microbiol 204:301. https://doi.org/10.1007/s00203-022-02905-x

Article  CAS  PubMed  PubMed Central  Google Scholar 

Geng Y, Zhao JY, Yuan HR, Li LL, Wen ML, Li MG, Tang SK (2021) Aestuariimicrobium ganziense sp. nov., a new Gram-positive bacterium isolated from soil in the Ganzi Tibetan autonomous prefecture, China. Arch Microbiol 203:2653–2658. https://doi.org/10.1007/s00203-021-02261-2

Article  CAS  PubMed  Google Scholar 

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876–4882. https://doi.org/10.1093/nar/25.24.4876

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547–1549. https://doi.org/10.1093/molbev/msy096

Article  CAS  PubMed  PubMed Central  Google Scholar 

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454

Article  CAS  PubMed  Google Scholar 

Fitch WM (1971) Toward defning the course of evolution: minimum change for a specifc tree topology. Syst Zool 20:406–416. https://doi.org/10.2307/2412116

Article  Google Scholar 

Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17(6):368–376. https://doi.org/10.1007/BF01734359

Article  ADS  CAS  PubMed  Google Scholar 

Felsenstein J (1985) Confdence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783–791. https://doi.org/10.2307/2408678

Article  PubMed  Google Scholar 

Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31(19):3210–3212. https://doi.org/10.1093/bioinformatics/btv351

Article  CAS  PubMed  Google Scholar 

Rodriguez -RLM, Gunturu S, Harvey WT, Rosselló-Mora R, Tiedje JM, Cole JR, Konstantinidis KT (2018) The Microbial genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Res 46(W1):W282–W288. https://doi.org/10.1093/nar/gky467

Article  CAS  Google Scholar 

De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12(1):133–142. https://doi.org/10.1111/j.1432-1033.1970.tb00830.x

Article  PubMed  Google Scholar 

Yoon SH, Ha SM, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110(10):1281–1286. https://doi.org/10.1007/s10482-017-0844-4

Article  CAS  PubMed  Google Scholar 

Konstantinidis KT, Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187(18):6258–6264. https://doi.org/10.1128/JB.187.18.6258-6264.2005

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lechevalier MA, Lechevalier PM, Gerber NN (1971) Chemical composition as a criterion in the classifcation of aerobic actinomycetes. Adv Appl Microbiol 14:47–72. https://doi.org/10.1016/S0065-2164(08)70539-2

Article  CAS  PubMed  Google Scholar 

Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230. https://doi.org/10.1099/00221287-100-2-221

Article  CAS  PubMed  Google Scholar 

Groth I, Schumann P, Weiss N, Martin K, Rainey FA (1996) Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46(1):234–239. https://doi.org/10.1099/00207713-46-1-234

Article  CAS  PubMed  Google Scholar 

Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241. https://doi.org/10.1016/0167-7012(84)90018-6

Article  CAS  Google Scholar 

Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67:640–645. https://doi.org/10.1099/ijsem.0.001677

Kiran S, Schumann P, Busse HJ, Spröer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake. Int J Syst Evol Microbiol 68:3416–3423. https://doi.org/10.1099/ijsem.0.002997

留言 (0)

沒有登入
gif