Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium Silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67(3):640–645. https://doi.org/10.1099/ijsem.0.001677
Article CAS PubMed Google Scholar
Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M, Affiliations V (2020) List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 70(11):5607–5612. https://doi.org/10.1099/ijsem.0.004332
Article PubMed PubMed Central Google Scholar
Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium Silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67(3):640–645. https://doi.org/10.1099/ijsem.0.001677
Article CAS PubMed Google Scholar
Kiran S, Schumann P, Busse HJ, Spröer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake. Int J Syst Evol Microbiol 68(11):3416–3423. https://doi.org/10.1099/ijsem.0.002997
Article CAS PubMed Google Scholar
Xu CH, Chen G, Liu Y, Xiao W, Cui XL, Ding ZG, Liu WH, Wang YX (2020) Azospirillum aestuarii sp. nov., a novel nitrogen-fixing and aerobic denitrifying bacteria isolated from an estuary of a freshwater river. Curr Microbiol 80(4):113. https://doi.org/10.1007/s00284-023-03213-3
Yin YL, Li FL, Wang L (2022) Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China. Arch Microbiol 204:466. https://doi.org/10.1007/s00203-022-03032-3
Article CAS PubMed PubMed Central Google Scholar
Tarrand JJ, Gröschel DH (1982) Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16(4):772–774. https://doi.org/10.1128/jcm.16.4.772-774
Article CAS PubMed PubMed Central Google Scholar
Huang JR, Han MX, Fang BZ, Yang J, Xiao HY, Zhang XY, Han JB, Yu DM, Jiang HC, Li WJ (2021) Aquiflexum lacus sp. nov., isolated from a lake sediment sample. Arch Microbiol 203:2911–2917. https://doi.org/10.1007/s00203-021-02280-z
Article CAS PubMed Google Scholar
An DF, Jiang LQ, Zhang K, Li GD, Wang XY, Jiang MG, Lang L, Wang LS, Imhoff JF, Jiang CL, Jiang Y (2021) Glaciibacter flavus sp. nov., isolated from a lichen sample. Arch Microbiol 203(5):2439–2444. https://doi.org/10.1007/s00203-021-02247-0
Article CAS PubMed Google Scholar
Máté R, Kutasi J, Bata-Vidács I, Kosztik, Kukolya J, Tóth E, Bóka K, Táncsics A, Kovács G, Nagy I, Tóth Á (2022) Flavobacterium hungaricum sp. nov. a novel soil inhabitant, cellulolytic bacterium isolated from plough field. Arch Microbiol 204:301. https://doi.org/10.1007/s00203-022-02905-x
Article CAS PubMed PubMed Central Google Scholar
Geng Y, Zhao JY, Yuan HR, Li LL, Wen ML, Li MG, Tang SK (2021) Aestuariimicrobium ganziense sp. nov., a new Gram-positive bacterium isolated from soil in the Ganzi Tibetan autonomous prefecture, China. Arch Microbiol 203:2653–2658. https://doi.org/10.1007/s00203-021-02261-2
Article CAS PubMed Google Scholar
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876–4882. https://doi.org/10.1093/nar/25.24.4876
Article CAS PubMed PubMed Central Google Scholar
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547–1549. https://doi.org/10.1093/molbev/msy096
Article CAS PubMed PubMed Central Google Scholar
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
Article CAS PubMed Google Scholar
Fitch WM (1971) Toward defning the course of evolution: minimum change for a specifc tree topology. Syst Zool 20:406–416. https://doi.org/10.2307/2412116
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17(6):368–376. https://doi.org/10.1007/BF01734359
Article ADS CAS PubMed Google Scholar
Felsenstein J (1985) Confdence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783–791. https://doi.org/10.2307/2408678
Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31(19):3210–3212. https://doi.org/10.1093/bioinformatics/btv351
Article CAS PubMed Google Scholar
Rodriguez -RLM, Gunturu S, Harvey WT, Rosselló-Mora R, Tiedje JM, Cole JR, Konstantinidis KT (2018) The Microbial genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Res 46(W1):W282–W288. https://doi.org/10.1093/nar/gky467
De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12(1):133–142. https://doi.org/10.1111/j.1432-1033.1970.tb00830.x
Yoon SH, Ha SM, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110(10):1281–1286. https://doi.org/10.1007/s10482-017-0844-4
Article CAS PubMed Google Scholar
Konstantinidis KT, Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187(18):6258–6264. https://doi.org/10.1128/JB.187.18.6258-6264.2005
Article CAS PubMed PubMed Central Google Scholar
Lechevalier MA, Lechevalier PM, Gerber NN (1971) Chemical composition as a criterion in the classifcation of aerobic actinomycetes. Adv Appl Microbiol 14:47–72. https://doi.org/10.1016/S0065-2164(08)70539-2
Article CAS PubMed Google Scholar
Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230. https://doi.org/10.1099/00221287-100-2-221
Article CAS PubMed Google Scholar
Groth I, Schumann P, Weiss N, Martin K, Rainey FA (1996) Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46(1):234–239. https://doi.org/10.1099/00207713-46-1-234
Article CAS PubMed Google Scholar
Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241. https://doi.org/10.1016/0167-7012(84)90018-6
Schumann P, Zhang DC, França L, Albuquerque L, da Costa MS, Margesin R (2017) Psychromicrobium silvestre gen. nov., sp. nov., an actinobacterium isolated from alpine forest soils. Int J Syst Evol Microbiol 67:640–645. https://doi.org/10.1099/ijsem.0.001677
Kiran S, Schumann P, Busse HJ, Spröer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake. Int J Syst Evol Microbiol 68:3416–3423. https://doi.org/10.1099/ijsem.0.002997
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