Alvarado, J. J., Azofeifa-Solano, J. C., Beita-Jiménez, A., Cortés, J., Mena, S., Salas-Moya, C., & Fernández-García, C. (En prensa). Reef environments of Murciélago Islands and Santa Elena Peninsula, Guanacaste Conservation Area, Costa Rican Pacific. Scientia Insularum.

Alvarado, J. J., Beita-Jimenez, A., Mena, S., Fernández-García, C., Cortés, J., Sánchez-Noguera, C., Jimenez, C., & Guzmán-Mora, A. G. (2018). Cuando la conservación no puede seguir el ritmo del desarrollo: Estado de salud de los ecosistemas coralinos del Pacífico Norte de Costa Rica. Revista de Biología Tropical, 66(Suplemento 1), S280-S308.

Alvarado, J. J., Beita-Jiménez, A., Mena, S., Fernández-García, C., & Guzmán-Mora, A. G. (2015). Ecosistemas coralinos del Área de Conservación Osa, Costa Rica: estructura y necesidades de conservación. Revista de Biología Tropical, 63(Suplemento 1), 219-259.

Alvarado, J. J., Beita, A., Mena, S., Fernández-García, C., Guzman-Mora, A. G., & Cortés, J. (2016). Ecosistemas coralinos del Parque Nacional Isla del Coco, Costa Rica: estructura y comparación 1987-2014. Revista de Biología Tropical, 64(Suplemento 1), S153-S175.

Alvarado, J. J., Cortés, J., Esquivel, M. F., & Salas, E. (2012). Costa Rica’s Marine Protected Areas: status and perspectives. Revista de Biología Tropical, 60(1), 129-142.

Alvarado, J. J., Herrera, B., Corrales, L., Asch, J., & Paaby, P. (2011). Identificación de las prioridades de conservación de la biodiversidad marina y costera en Costa Rica. Revista de Biología Tropical, 59(2), 829-842.

Alvarado, J. J., Sánchez-Noguera, C., Arias-Godínez, G., Araya, T., Fernández-García, C., & Guzmán, A. G. (2020). Impact of El Niño 2015-2016 on the coral reefs of the Pacific of Costa Rica: the potential role of marine protection. Revista de Biología Tropical, 68(Supplement 1), S271-S282.

Bellwood, D. R., Streit, R. P., Brandl, S. J., & Tebbett, S. B. (2019). The meaning of the term ‘function’ in ecology: a coral reef perspective. Functional Ecology, 33(6), 948-961.

BIOMARCC-SINAC-GIZ. (2012). Clasificación sistemas marino costeros costa pacífica de Costa Rica. San José, Costa Rica.

Breedy, O., & Guzmán, H. M. (2003). Octocorals from Costa Rica: The genus Pacifigorgia (Coelenterata: Octocorallia: Gorgoniidae). Zootaxa, 281, 1-60.

Chacón-Monge, J. L., Azofeifa-Solano, J.C., Alvarado, J. J., & Cortés, J. (2021). Área de Conservación Guanacaste Echinoderms, North Pacific of Costa Rica. Revista de Biología Tropical, 69(Supplement 1), 487-500.

Cheminée, A., Pastor, J., Bianchimani, O., Thiriet, P., Sala, E., Cottalorda, J. M., Jean-Marie Dominici, J. M., Lejeune, P., & Francour, P. (2017). Juvenile fish assemblages in temperate rocky reefs are shaped by the presence of macro-algae canopy and its three-dimensional structure. Scientific Reports, 7(1), 1-11.

Clarke, K. R., & Warwick, R. M. (1994). Change in Marine Communities: An Approach to Statistical Analysis and Interpretation. Plymouth, UK: Natural Environmental Research Council.

Cortés, J. (2016). The Pacific coastal and marine ecosystems. In M. Kappelle (Ed.), Costa Rican Ecosystems (pp. 97-138). Chicago and London: University of Chicago Press.

Cortés, J. (2017). Marine biodiversity baseline for Área de Conservación Guanacaste, Costa Rica: published records. ZooKeys, (652), 129-127.

Cortés, J., & Joyce, F. (2020). BioMar-ACG: A successful partnership to inventory and promulgate marine biodiversity. Biotropica, 52(6), 1103-1106.

Cortés, J., Samper-Villareal, J., & Bernecker, A. (2014). Seasonal phenology of Sargassum liebmannii J. Agardh (Fucales, Heterokontophyta) in an upwelling area of the Eastern Tropical Pacific. Aquatic Botany, 119, 105-110.

Costello, M. J., Michener, W. K., Gahegan, M., Zhang, Z. Q., & Bourne, P. E. (2013). Biodiversity data should be published, cited, and peer reviewed. Trends in Ecology & Evolution, 28(8), 454-461.

Dauvin, J. C., Lucas, S., Navon, M., Lesourd, S., Mear, Y., Poizot, E., & Alizier, S. (2017). Does the hydrodynamic, morphometric and sedimentary environment explain the structure of soft-bottom benthic assemblages in the Eastern Bay of Seine (English Channel)? Estuarine, Coastal and Shelf Science 189, 156-172.

Dean, H. K. (2008). The use of polychaetes (Annelida) as indicator species of marine pollution: a review. Revista de Biología Tropical, 56(Supplement 4), 11-38.

Dean, H., Sibaja-Cordero, J., & Cortés, J. (2009). Occurrence of the Phoronid Phoronopsis albomaculata in Cocos Island, Costa Rica. Pacific Science, 64, 459-462.

Denyer, P., Cortés, J., & Cárdenes, G. (2005). Hallazgo de dunas fósiles de final del pleistoceno en las Islas Murciélago, Costa Rica. Revista Geológica de América Central, 33, 29-44.

Denyer, P., & Gazel, E. (2009). The Costa Rican Jurassic to Miocene oceanic complexes: Origin, tectonics and relations. Journal of South American Earth Sciences, 28, 429-422.

Frithsen, J. B., & Holland, A. S. (1990). Benthic communities as indicators of ecosystem condition. In D. H. McKenzie, D. E. Hyatt, & V. J. McDonald (Eds.), Geological Indicators (pp. 459-460). London, UK: Chapman & Hall.

Gouvêa, L. P., Assis, J., Gurgel, C. F., Serrão, E. A., Silveira, T. C., Santos, R., Duarte, C. M., Peres, L. M. C., Carvalho, V. F., Batista, M. Bastos, E., Sissini, M. N., & Horta, P. A. (2020). Golden carbon of Sargassum forests revealed as an opportunity for climate change mitigation. Science of the Total Environment, 729, 138745.

Gray, J. S. (1981). The Ecology of Marine Sediments. Cambridge, UK: Cambridge University Press.

Hauff, F., Hoernle, K., Van Den Bogaard, P., Alvarado, G., & Garbe-Shonberg, D. (2000). Age and geochemistry of basaltic complexes in western Costa Rica: Contributions to the geotectonic evolution of Central America. Geochemistry, Geophysics, Geosystems, 1(1), 1999GC000020. https://doi.org/10.1029/1999GC000020

He, Q., & Silliman, B. R. (2019). Climate change, human impacts, and coastal ecosystems in the Anthropocene. Current Biology, 29(19), R1021-R1035.

Jiménez, C., Cortés, J., León, A., & Ruiz, E. (2001). Coral bleaching and mortality associated with the 1997-98 El Niño in an upwelling environment in the eastern Pacific (Gulf of Papagayo, Costa Rica). Bulletin of Marine Science, 69, 151-169.

Legeckis, R. (1988). Upwelling off the Gulfs of Panama and Papagayo in the tropical Pacific during March 1985. Journal of Geophysical Research, 93, 15485-15489.

Link, J. (2001). Ecological considerations in fisheries management. When does it matter? Fisheries, 27(4), 10-16.

Lizano, O. G., & Alfaro, E. J. (2014). Características de la dinámica atmosférica y oceánica en algunas regiones del Área de Conservación Guanacaste (ACG), Costa Rica. Revista de Biología Tropical, 62(Supplement 4), 17-31.

Mecho, A., Easton, E. E., Sellanes, J., Gorny, M., & Mah, C. (2019). Unexplored diversity of the mesophotic echinoderm fauna of the Easter Island ecoregion. Marine Biology, 166(7), 91.

McCreary, J. P., Lee, H. S., & Enfield, D. B. (1989). The response of the coastal ocean to strong offshore winds, with application to the Gulfs of Tehuantepec and Papagayo. Journal of Marine Research, 47, 81-109.

Pedroche, F. F., Silva, P. C., Aguilar-Rosas, L. E., Dreckmann, K. M., & Aguilar-Rosas, R. (2005). Catálogo de las algas marinas bentónicas del Pacífico de México. I. Chlorophycota. Ensenada, México: Universidad Autónoma de Baja California.

Reiss, H., & Kroncke, I. (2005). Seasonal variability of benthic indices: an approach to test the applicability of different indices for ecosystem quality assessment. Marine Pollution Bulletin, 50(12), 1490–1499.

Riginos, C., & Leis, J. M. (2019). Do tiny fish rule the reefs? Science, 364(6446), 1128-1130.

Rodríguez, A., Alfaro, E.J., & Cortés, J. (2021). Spatial and temporal dynamics of the hydrology at Salinas Bay, Costa Rica, Eastern Tropical Pacific. Revista de Biología Tropical, 69(Supplement 2)

Samper-Villarreal, J., Bourg, A., Sibaja-Cordero, J. A., & Cortés, J. (2014). Presence of a Halophila baillonii Asch. (Hydrocharitaceae) seagrass meadow and associated macrofauna on the Pacific coast of Costa Rica. Pacific Science, 68, 435-444.

Samper-Villarreal, J., Cambronero-Bolaños, R., Heidemeyer, M., Mora-Vargas, M., & Mora-Vargas, R. (2020). Characterization of seagrasses at two new locations in the Eastern Tropical Pacific (El Jobo and Matapalito, Costa Rica). Aquatic Botany, 165, 103237.

Samper-Villarreal, J., van Tussenbroek, B. I., & Cortés, J. (2018). Seagrasses of Costa Rica: from the mighty Caribbean to the dynamic meadows of the Eastern Tropical Pacific. Revista de Biología Tropical, 66(Supplement 1), S53-S65.

Santagata, S. (2015). Phoronida. In A. Wanninger (Ed.), Evolutionary Developmental Biology of Invertebrates (Vol. 2 Lophotrochozoa (Spiralia), pp. 231–246). Wien: Springer.

Sibaja-Cordero, J. A., & Cortés, J. (2008). Vertical zonation of rocky intertidal organisms in a seasonal upwelling area (Eastern Tropical Pacific). Revista de Biología Tropical, 56(Supplement 4), 91-104.

Sibaja-Cordero, J. A., & Vargas-Zamora, J. A. (2006). Zonación vertical de epifauna y algas en litorales rocosos del Golfo de Nicoya, Costa Rica. Revista de Biología Tropical, 54(Supplement 1), 49-67.

Stuhldreier, I., Sánchez-Noguera, C., Rixen, T., Cortés, J., Morales, A., & Wild, C. (2015). Effects of seasonal upwelling on inorganic and organic matter dynamics in the water column of eastern Pacific coral reefs. PLoS ONE, 10(11), e0142681.

Suárez, A., Riosmena-Rodríguez, R., & Cortés, J. (2021). Checklist of invertebrates and conspicuous fishes in rocky reefs and Sargassum beds in the North Pacific of Costa Rica. Revista de Biología Tropical, 69(Supplement 2),

Tortolero-Langarica, J. J. A., Carricart-Ganivet, J. P., Cupul-Magaña, A. L., & Rodríguez-Troncoso, A. P. (2017). Historical insights on growth rates of the reef-building corals Pavona gigantea and Porites panamensis from the Northeastern tropical Pacific. Marine Environmental Research, 132, 23-32.

Vargas-Castillo, R., & Cortés, J. (2019). New records of marine decapods and stomatopods in Área de Conservación Guanacaste (ACG): four years of marine biodiversity inventorying. Marine Biodiversity Records, 12(1), 21.

Worm, B., Barbier, E. B., Beaumont, N., Duffy, J. E., Folke, C., Halpern, B. S., Jackson, J. B. C., Lotze, H. K., Micheli, F., Palumbi, S. R., Enric, S., Selkoe, K. A., Stachowicz, J. J., & Watson, R. (2006). Impacts of biodiversity loss on ocean ecosystem services. Science, 314(5800), 787-790.

Zamora-Trejos, P., & Cortés, J. (2009). Los manglares de Costa Rica: el Pacífico norte. Revista de Biología Tropical, 57(3), 473-488.