Cloning of the first cDNA encoding a putative CCRFamide precursor: identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus

Bao C, Yang Y, Huang H, Ye H (2015) Neuropeptides in the cerebral ganglia of the mud crab, Scylla paramamosain: transcriptomic analysis and expression profiles during vitellogenesis. Sci Rep 5:17055

CAS  Article  Google Scholar 

Bendtsen JD, Nielsen H, von Heijne G, Brunak S (2004) Improved prediction of signal peptides: signalP 3.0. J Mol Biol 340:783–795

Article  Google Scholar 

Christie AE (2011) Crustacean neuroendocrine systems and their signaling agents. Cell Tissue Res 345:41–67

CAS  Article  Google Scholar 

Christie AE (2014) Prediction of the peptidomes of Tigriopus californicus and Lepeophtheirus salmonis (Copepoda, Crustacea). Gen Comp Endocrinol 201:87–106

CAS  Article  Google Scholar 

Christie AE, Chi M, Lameyer TJ, Pascual MG, Shea DN, Stanhope ME, Schulz DJ, Dickinson PS (2015) Neuropeptidergic signaling in the American lobster Homarus americanus: new insights from high-throughput nucleotide sequencing. PLoS ONE 10:e0145964

Article  Google Scholar 

Christie AE, Roncalli V, Cieslak MC, Pascual MG, Yu A, Lameyer TJ, Stanhope ME, Dickinson PS (2017) Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome. Gen Comp Endocrinol 243:96–119

CAS  Article  Google Scholar 

Christie AE, Yu A, Pascual MG, Roncalli V, Cieslak MC, Warner AN, Lameyer TJ, Stanhope ME, Dickinson PS, Hull JJ (2018a) Circadian signaling in Homarus americanus: region-specific de novo assembled transcriptomes show that both the brain and eyestalk ganglia possess the molecular components of a putative clock system. Mar Genom 40:25–44

Article  Google Scholar 

Christie AE, Yu A, Roncalli V, Pascual MG, Cieslak MC, Warner AN, Lameyer TJ, Stanhope ME, Dickinson PS, Hull JJ (2018b) Molecular evidence for an intrinsic circadian pacemaker in the cardiac ganglion of the American lobster, Homarus americanus—Is diel cycling of heartbeat frequency controlled by a peripheral clock system? Mar Genom 41:19–30

Article  Google Scholar 

Conzelmann M, Williams EA, Krug K, Franz-Wachtel M, Macek B, Jékely G (2013) The neuropeptide complement of the marine annelid Platynereis dumerilii. BMC Genom 14:906

Article  Google Scholar 

Cooke IM (2002) Reliable, responsive pacemaking and pattern generation with minimal cell numbers: the crustacean cardiac ganglion. Biol Bull 202:108–136

Article  Google Scholar 

Dickinson PS, Calkins A, Stevens JS (2015) Related neuropeptides use different balances of unitary mechanisms to modulate the cardiac neuromuscular system in the American lobster, Homarus americanus. J Neurophysiol 113:856–870

CAS  Article  Google Scholar 

Dickinson ES, Johnson AS, Ellers O, Dickinson PS (2016) Forces generated during stretch in the heart of the lobster Homarus americanus are anisotropic and are altered by neuromodulators. J Exp Biol 219:1187–1202

CAS  Article  Google Scholar 

Dickinson PS, Dickinson ES, Oleisky ER, Rivera CD, Stanhope ME, Stemmler EA, Hull JJ, Christie AE (2019) AMGSEFLamide, a member of a broadly conserved peptide family, modulates multiple neural networks in Homarus americanus. J Exp Biol 222:jeb194092

Article  Google Scholar 

Dircksen H, Neupert S, Predel R, Verleyen P, Huybrechts J, Strauss J, Hauser F, Stafflinger E, Schneider M, Pauwels K, Schoofs L, Grimmelikhuijzen CJ (2011) Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones. J Proteome Res 10:4478–4504

CAS  Article  Google Scholar 

Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797

CAS  Article  Google Scholar 

Ferrè F, Clote P (2005) DiANNA: a web server for disulfide connectivity prediction. Nucleic Acids Res 33:W230–W232

Article  Google Scholar 

Fort TJ, Brezina V, Miller MW (2007a) Regulation of the crab heartbeat by FMRFamide-like peptides: multiple interacting effects on center and periphery. J Neurophysiol 98:2887–2902

Article  Google Scholar 

Fort TJ, García-Crescioni K, Agricola HJ, Brezina V, Miller MW (2007b) Regulation of the crab heartbeat by crustacean cardioactive peptide (CCAP): central and peripheral actions. J Neurophysiol 97:3407–3420

CAS  Article  Google Scholar 

Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780

CAS  Article  Google Scholar 

Lima L, Sinaimeri B, Sacomoto G, Lopez-Maestre H, Marchet C, Miele V, Sagot MF, Lacroix V (2017) Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. Algorithms Mol Biol 12:1–19

Article  Google Scholar 

Monigatti F, Gasteiger E, Bairoch A, Jung E (2002) The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics 18:769–770

CAS  Article  Google Scholar 

Nässel DR, Zandawala M (2019) Recent advances in neuropeptide signaling in Drosophila, from genes to physiology and behavior. Prog Neurobiol 179:101607

Article  Google Scholar 

Nguyen TV, Rotllant GE, Cummins SF, Elizur A, Ventura T (2018) Insights into sexual maturation and reproduction in the Norway lobster (Nephrops norvegicus) via in silico prediction and characterization of neuropeptides and G protein-coupled receptors. Front Endocrinol (Lausanne) 9:430

Article  Google Scholar 

Northcutt AJ, Lett KM, Garcia VB, Diester CM, Lane BJ, Marder E, Schulz DJ (2016) Deep sequencing of transcriptomes from the nervous systems of two decapod crustaceans to characterize genes important for neural circuit function and modulation. BMC Genom 17:868

Article  Google Scholar 

Oliphant A, Alexander JL, Swain MT, Webster SG, Wilcockson DC (2018) Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas. BMC Genom 19:711

Article  Google Scholar 

Stevens JS, Cashman CR, Smith CM, Beale KM, Towle DW, Christie AE, Dickinson PS (2009) The peptide hormone pQDLDHVFLRFamide (crustacean myosuppressin) modulates the Homarus americanus cardiac neuromuscular system at multiple sites. J Exp Biol 212:3961–3976

CAS  Article  Google Scholar 

Stewart MJ, Favrel P, Rotgans BA, Wang T, Zhao M, Sohail M, O’Connor WA, Elizur A, Henry J, Cummins SF (2014) Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas: a bioinformatic and peptidomic survey. BMC Genom 15:840

Article  Google Scholar 

Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R (2016) Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects. J Proteom 132:77–84

CAS  Article  Google Scholar 

Tikhonova IG, Gigoux V, Fourmy D (2019) Understanding peptide binding in class A G protein-coupled receptors. Mol Pharm 96:550–561

CAS  Article  Google Scholar 

Veenstra JA (2000) Mono- and dibasic proteolytic cleavage sites in insect neuroendocrine peptide precursors. Arch Insect Biochem Physiol 43:49–63

CAS  Article  Google Scholar 

Veenstra JA (2010) Neurohormones and neuropeptides encoded by the genome of Lottia gigantea, with reference to other mollusks and insects. Gen Comp Endocrinol 167:86–103

CAS  Article  Google Scholar 

Veenstra JA (2015) The power of next-generation sequencing as illustrated by the neuropeptidome of the crayfish Procambarus clarkii. Gen Comp Endocrinol 224:84–95

CAS  Article  Google Scholar 

Veenstra JA (2016a) Neuropeptide evolution: chelicerate neurohormone and neuropeptide genes may reflect one or more whole genome duplications. Gen Comp Endocrinol 229:41–55

CAS  Article  Google Scholar 

Veenstra JA (2016b) Similarities between decapod and insect neuropeptidomes. PeerJ 4:e2043

Article  Google Scholar 

Veenstra JA (2019) Coleoptera genome and transcriptome sequences reveal numerous differences in neuropeptide signaling between species. PeerJ 7:e7144

Article  Google Scholar 

Veenstra JA, Rombauts S, Grbić M (2012) In silico cloning of genes encoding neuropeptides, neurohormones and their putative G-protein coupled receptors in a spider mite. Insect Biochem Mol Biol 42:277–295

CAS  Article  Google Scholar 

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