Detection of community-acquired respiratory viruses during COVID-19 pandemic in subtropical region in Japan

Menni C, Valdes AM, Polidori L, Antonelli M, Penamakuri S, Nogal A et al (2022) Symptom prevalence, duration, and risk of hospital admission in individuals infected with SARS-CoV-2 during periods of omicron and delta variant dominance: a prospective observational study from the ZOE COVID Study. Lancet 23(399):1618–1624

Article  Google Scholar 

Walter JM (2020) Other Respiratory Viruses as a Cause of Community-Acquired Pneumonia. Semin Respir Crit Care Med 41(4):579–591

Article  PubMed  Google Scholar 

Pavia AT (2011) Viral infections of the lower respiratory tract: old viruses, new viruses, and the role of diagnosis. Clin Infect Dis. 52(Suppl 4):S284-9

Article  PubMed  Google Scholar 

Li X, Li J, Meng L, Zhu W, Liu X, Yang M et al (2018) Viral etiologies and epidemiology of patients with acute respiratory infections based on sentinel hospitals in Gansu Province, Northwest China, 2011–2015. J Med Virol 90(5):828–835

Article  PubMed  PubMed Central  CAS  Google Scholar 

Morikawa S, Kohdera U, Hosaka T, Ishii K, Akagawa S, Hiroi S et al (2015) Seasonal variations of respiratory viruses and etiology of human rhinovirus infection in children. J Clin Virol 73:14–19

Article  PubMed  PubMed Central  Google Scholar 

Jain S, Self WH, Wunderink RG, Fakhran S, Balk R, Bramley AM et al (2015) Community-acquired pneumonia requiring hospitalization among U.S. adults. N Engl J Med 373(5):415–27

Article  PubMed  PubMed Central  CAS  Google Scholar 

Jain S, Williams DJ, Arnold SR, Ampofo K, Bramley AM, Reed C et al (2015) Community-acquired pneumonia requiring hospitalization among U.S. children. N Engl J Med 372(9):835–45

Article  PubMed  PubMed Central  CAS  Google Scholar 

Burk M, El-Kersh K, Saad M, Wiemken T, Ramirez J, Cavallazzi R et al (2016) Viral infection in community-acquired pneumonia: a systematic review and meta-analysis. Eur Respir Rev 25(140):178–188

Article  PubMed  PubMed Central  Google Scholar 

Moriyama M, Hugentobler WJ, Iwasaki A (2020) Seasonality of Respiratory Viral Infections. Ann Rev Virol 7(1):83–101

Article  CAS  Google Scholar 

Chow EJ, Uyeki TM, Chu HY (2023) The effects of the COVID-19 pandemic on community respiratory virus activity. Nat Rev Microbiol 21:195–210

PubMed  CAS  Google Scholar 

Achangwa C, Park H, Ryu S, Lee MS (2022) Collateral Impact of Public Health and Social Measures on Respiratory Virus Activity during the COVID-19 Pandemic 2020–2021. Viruses 14(5):1071

Article  PubMed  PubMed Central  CAS  Google Scholar 

Groves HE, Piché-Renaud PP, Peci A, Farrar DS, Buckrell S, Bancej C et al (2021) The impact of the COVID-19 pandemic on influenza, respiratory syncytial virus, and other seasonal respiratory virus circulation in Canada: A population-based study. Lancet Reg Health Am. 1:100015

PubMed  PubMed Central  Google Scholar 

Hanson KE, Caliendo AM, Arias CA, Hayden MK, Englund JA, Lee MJ et al (2021) The Infectious Diseases Society of America Guidelines on the Diagnosis of COVID-19: Molecular Diagnostic Testing. Clin Infect Dis. 22:ciab048

Google Scholar 

Amato L, Jurisic L, Puglia I, Di Lollo V, Curini V, Torzi G et al (2021) Multiple detection and spread of novel strains of the SARS-CoV-2 B.1.177 (B.1.177.75) lineage that test negative by a commercially available nucleocapsid gene real-time RT-PCR. Emerg Microbes Infect 10:1148–1155

Article  PubMed  PubMed Central  CAS  Google Scholar 

Pezzi L, Charrel RN, Ninove L, Nougairede A, Molle G, Coutard B et al (2020) Development and Evaluation of a duo SARS-CoV-2 RT-qPCR Assay Combining Two Assays Approved by the World Health Organization Targeting the Envelope and the RNA-Dependant RNA Polymerase (RdRp) Coding Regions. Viruses 12:686

Article  PubMed  PubMed Central  CAS  Google Scholar 

Leung NHL, Chu DKW, Shiu EYC, Chan K-H, McDevitt JJ, Hau BJP et al (2020) Respiratory virus shedding in exhaled breath and efficacy of face masks. Nat Med 26:676–680

Article  PubMed  PubMed Central  CAS  Google Scholar 

Park S, Michelow IC, Choe YJ (2021) Shifting Patterns of Respiratory Virus Activity Following Social Distancing Measures for Coronavirus Disease 2019 in South Korea. J Infect Dis 224:1900–1906

Article  PubMed  CAS  Google Scholar 

Dee K, Goldfarb DM, Haney J, Amat JAR, Herder V, Stewart M et al (2021) Human Rhinovirus Infection Blocks Severe Acute Respiratory Syndrome Coronavirus 2 Replication Within the Respiratory Epithelium: Implications for COVID-19 Epidemiology. J Infect Dis 224:31–38

Article  PubMed  PubMed Central  CAS  Google Scholar 

Duclos M, Hommel B, Allantaz F, Powell M, Posteraro B, Sanguinetti M (2022) Multiplex PCR Detection of Respiratory Tract Infections in SARS-CoV-2-Negative Patients Admitted to the Emergency Department: an International Multicenter Study during the COVID-19 Pandemic. Microbiol Spectr 10:e0236822

Article  PubMed  Google Scholar 

Si Y, Zhao Z, Chen R, Zhong H, Liu T, Wang M et al (2020) Epidemiological surveillance of common respiratory viruses in patients with suspected COVID-19 in Southwest China. BMC Infect Dis 21(20):688

Article  Google Scholar 

Chiu SS, Cowling BJ, Peiris JSM, Chan ELY, Wong WHS, Lee KP (2022) Effects of Nonpharmaceutical COVID-19 Interventions on Pediatric Hospitalizations for Other Respiratory Virus Infections, Hong Kong. Emerg Infect Dis 28(1):62–68

Article  PubMed  PubMed Central  CAS  Google Scholar 

Eisen AKA, Gularte JS, Demoliner M, Pereira VMAG, Heldt FH et al (2021) Low circulation of Influenza A and coinfection with SARS-CoV-2 among other respiratory viruses during the COVID-19 pandemic in a region of southern Brazil. J Med Virol 93(7):4392–4398

Article  PubMed  PubMed Central  CAS  Google Scholar 

Agrupis KA, Villanueva AMG, Sayo AR, Lazaro J, Han SM, Celis AC et al (2021) If not COVID-19 what is it? Analysis of COVID-19 versus common respiratory viruses among symptomatic health care workers in a tertiary infectious disease referral hospital in Manila, Philippines. Trop Med Infect Dis 6(1):39

Article  PubMed  PubMed Central  Google Scholar 

Vink E, Banda L, Amoah AS, Kasenda S, Read JM, Jewell C et al (2023) Prevalence of Endemic Respiratory Viruses During the COVID-19 Pandemic in Urban and Rural Malawi. Open Forum Infect Dis 11(2):ofad643

Article  PubMed  PubMed Central  Google Scholar 

Sreenath K, Batra P, Vinayaraj EV, Bhatia R, SaiKiran K, Singh V et al (2021) Coinfections with Other Respiratory Pathogens among Patients with COVID-19. Microbiol Spectr 9:e0016321

Article  PubMed  CAS  Google Scholar 

Fahim M, Roshdy WH, Deghedy O, Kamel R, Naguib A, Showky S et al (2022) Epidemiology, disease severity and outcome of severe acute respiratory syndrome coronavirus 2 and influenza viruses coinfection seen at Egypt integrated acute respiratory infections surveillance, 2020–2022. Can J Infect Dis Med Microbiol 17:7497500

Google Scholar 

Lansbury L, Lim B, Baskaran V, Lim WS (2020) Co-infections in people with COVID-19: a systematic review and meta-analysis. J Infect 81:266–275

Article  PubMed  PubMed Central  CAS  Google Scholar 

Chartrand C, Tremblay N, Renaud C, Papenburg J (2015) Diagnostic Accuracy of Rapid Antigen Detection Tests for Respiratory Syncytial Virus Infection: Systematic Review and Meta-analysis. J Clin Microbiol 53:3738–3749

Article  PubMed  PubMed Central  CAS  Google Scholar 

Wikramaratna PS, Paton RS, Ghafari M, Lourenço J (2020) Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR. Euro Surveill 25(50):2000568

Article  PubMed  PubMed Central  CAS  Google Scholar 

Kami W, Kinjo T, Hashioka H, Arakaki W, Uechi K, Takahashi A et al (2023) Impact of G29179T mutation on two commercial PCR assays for SARS-CoV-2 detection. J Virol Methods 314:114692

Article  PubMed  PubMed Central  CAS 

留言 (0)

沒有登入
gif