Enhancing clinical microbiology for genomic surveillance of antimicrobial resistance implementation in Africa

Global burden of. Bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet. 2022;399(10325):629–55.

Article  Google Scholar 

EClinicalMedicine. Antimicrobial resistance: a top ten global public health threat. eClinicalMedicine [Internet]. 2021 Nov 1 [cited 2023 Jul 21];41. https://www.thelancet.com/journals/eclinm/article/PIIS2589-5370(21)00502-2/abstract

World Health Organization. Global action plan on antimicrobial resistance [Internet]. Geneva: World Health Organization. 2015 [cited 2023 Oct 26]. 28 p. https://iris.who.int/handle/10665/193736

Global Antimicrobial Resistance and Use Surveillance System (GLASS). Report: 2021 [Internet]. [cited 2023 Sep 21]. https://www.who.int/publications-detail-redirect/9789240027336

Varma JK, Oppong-Otoo J, Ondoa P, Perovic O, Park BJ, Laxminarayan R, et al. Africa Centres for Disease Control and Prevention’s framework for antimicrobial resistance control in Africa. Afr J Lab Med. 2018;7(2):4.

Article  Google Scholar 

Baker S, Thomson N, Weill F-X, et al. Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science. 2018;360:733–8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bentley SD, Parkhill J. Genomic perspectives on the evolution and spread of bacterial pathogens. Proc Biol Sci. 2015;282:20150488.

PubMed  PubMed Central  Google Scholar 

NIHR Global Health Research Unit on Genomic Surveillance of AMR. Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: a roadmap. BMJ Glob Health. 2020;5(11):e002244. https://doi.org/10.1136/bmjgh-2019-002244.

Article  Google Scholar 

Iskandar K, Molinier L, Hallit S, Sartelli M, Hardcastle TC, Haque M, et al. Surveillance of antimicrobial resistance in low- and middle-income countries: a scattered picture. Antimicrob Resist Infect Control. 2021;10(1):1–19.

Article  Google Scholar 

Kekre M, Arevalo SA, Valencia MF, Lagrada ML, Macaranas PKV, Nagaraj G, et al. Integrating scalable genome sequencing into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance. Clin Infect Dis. 2021;73(Supplement4):S258–66.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Magobo RE, Ismail H, Lowe M, Strasheim W, Mogokotleng R, Perovic O et al. Outbreak of NDM-1– and OXA-181–Producing Klebsiella pneumoniae Bloodstream Infections in a Neonatal Unit, South Africa - Volume 29, Number 8—August 2023 - Emerging Infectious Diseases journal - CDC. [cited 2023 Oct 26]; https://wwwnc.cdc.gov/eid/article/29/8/23-0484_article

Yamba K, Kapesa C, Mpabalwani E, Hachaambwa L, Smith AM, Young AL et al. Antimicrobial susceptibility and genomic profiling of Salmonella enterica from bloodstream infections at a tertiary referral hospital in Lusaka, Zambia, 2018–2019. IJID Regions. 2022;3:248.

Carey ME, Dyson ZA, Ingle DJ, Amir A, Aworh MK, Chattaway MA et al. eLife. eLife Sciences Publications Limited; 2023 [cited 2024 Jun 10]. Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes. Available from: https://elifesciences.org/articles/85867.

Okomo U, Darboe S, Bah S, Ayorinde A, Jarju S, Sesay A et al. Maternal colonization and early-onset neonatal bacterial sepsis in the Gambia, West Africa: a genomic analysis of vertical transmission. Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Internet]. 2023 Mar [cited 2023 Oct 26];29(3). https://pubmed.ncbi.nlm.nih.gov/36243352/

Vounba P, Loul S, Tamadea LF, Siawaya JFD. Microbiology laboratories involved in disease and antimicrobial resistance surveillance: Strengths and challenges of the central African states. African Journal of Laboratory Medicine [Internet]. 2022 [cited 2023 Jul 21];11(1). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8991180/

ASLM_MAAP-Policy-Brief_Embargoed. -until-15-Sept-6AM-GMT.pdf [Internet]. [cited 2023 Mar 6]. https://aslm.org/wp-content/uploads/2022/09/ASLM_MAAP-Policy-Brief_Embargoed-until-15-Sept-6AM-GMT.pdf?x26552

Legba BB, Dougnon V, Koudokpon H, Mero S, Elovainio R, Parry M, et al. Assessment of blood cultures and antibiotic susceptibility testing for bacterial sepsis diagnosis and utilization of results by clinicians in Benin: a qualitative study. Front Public Health. 2023;10:1088590.

Article  PubMed  PubMed Central  Google Scholar 

Patel R, Fang FC. Diagnostic stewardship: opportunity for a Laboratory-Infectious diseases Partnership. Clin Infect Dis. 2018;67(5):799–801. https://doi.org/10.1093/cid/ciy077. PMID: 29547995; PMCID: PMC6093996.

Article  PubMed  PubMed Central  Google Scholar 

Perovic O, Yahaya AA, Viljoen C, Ndihokubwayo JB, Smith M, Coulibaly SO et al. External Quality Assessment of Bacterial Identification and Antimicrobial Susceptibility Testing in African National Public Health Laboratories, 2011–2016. Tropical Medicine and Infectious Disease [Internet]. 2019 Dec [cited 2023 Jul 21];4(4). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6958417/

Joloba M, Mwangi C, Alexander H, Nadunga D, Bwanga F, Modi N, et al. Strengthening the Tuberculosis Specimen Referral Network in Uganda: the role of public-private partnerships. J Infect Dis. 2016;213(suppl2):S41–6.

Article  PubMed  PubMed Central  Google Scholar 

Kiyaga C, Sendagire H, Joseph E, McConnell I, Grosz J, Narayan V et al. Uganda’s New National Laboratory Sample Transport System: A Successful Model for Improving Access to Diagnostic Services for Early Infant HIV Diagnosis and Other Programs. Pai M, editor. PLoS ONE. 2013;8(11):e78609.

van der Beatrice T, Datema B, Marondera J, Anderson S, Adjei-Kyei E, Shumba et al. Leading Laboratory Quality Management Systems in Africa into the Next Decade. Lab Cult. 2021;(26):12–8.

Amukele TK, Michael K, Hanes M, Miller RE, Jackson JB. External Quality Assurance Performance of Clinical Research Laboratories in Sub-saharan Africa. Am J Clin Pathol. 2012;138(5):720–3.

Article  PubMed  Google Scholar 

Alemnji GA, Zeh C, Yao K, Fonjungo PN. Strengthening national health laboratories in sub-saharan Africa: a decade of remarkable progress. Tropical Med Int Health. 2014;19(4):450–8.

Article  CAS  Google Scholar 

Maruta T, Yao K, Ndlovu N, Moyo S. Training-of-trainers: A strategy to build country capacity for SLMTA expansion and sustainability. African journal of laboratory medicine [Internet]. 2014 [cited 2023 Oct 30];3(2). https://pubmed.ncbi.nlm.nih.gov/26753131/

SLMTA | Strengthening Laboratory Management Toward Accreditation [Internet]. [cited 2023 Jul 21]. https://slmta.org/accredited-labs/

Fleming KA, Horton S, Wilson ML, Atun R, DeStigter K, Flanigan J, et al. The Lancet Commission on diagnostics: transforming access to diagnostics. Lancet (London England). 2021;398(10315):1997.

Article  PubMed  Google Scholar 

Schneidman M, Dacombe RJ, Carter J. Laboratory Professionals in Africa: The Backbone of Quality Diagnostics. 2014 Nov [cited 2023 Sep 22]; http://hdl.handle.net/10986/21115

Mataka A, Kwame, Asante, ‘Buck’Chaffee C, Rosales A, Mupfumi L, Idigbe O. Building qualification frameworks for African experts. Lab Cult. 2021;(26):8–11.

Competency Framework for Health Workers. ’ Education and Training on Antimicrobial Resistance [Internet]. [cited 2023 Nov 3]. https://www.who.int/news/item/16-06-2019-publication-of-who-competency-framework-for-health-workers’-education-and-training-on-antimicrobial-resistance

Nqobile Ndlovu. The ASLM Academy: a strategy to transform laboratory workforce development in Africa. Lab Cult. 2021;(26):6–7.

Mynhardt M, Mwila C, Habtemariam Mk, Tshangela A, Martinez M, Ngongo N et al. Empowering Africa’s healthcare future: The crucial role of human capital development in bio- and pharmaceutical manufacturing. Journal of public health in Africa [Internet]. 2023 Dec 18 [cited 2024 Jun 10];14(10). https://pubmed.ncbi.nlm.nih.gov/38476657/

Ssekitoleko RT, Arinda B, Oshabahebwa S, Namuli LK, Mugaga J, Namayega C, et al. View of the status of medical devices and their utilization in 9 tertiary hospitals and 5 research institutions in Uganda. J Global Clin Eng. 2021;4(3):5–15. https://doi.org/10.31354/globalce.v4i3.127.

Article  Google Scholar 

Fonjungo P, Kebede Y, Messele T, Ayana G, Tibesso G, Abebe A et al. Laboratory equipment maintenance: a critical bottleneck for strengthening health systems in sub-Saharan Africa? Journal of public health policy [Internet]. 2012 Feb [cited 2023 Jul 23];33(1). https://pubmed.ncbi.nlm.nih.gov/22071568/

Laboratory E, Management A. Guidance to African Union Member States [Internet]. Africa CDC. [cited 2023 Dec 27]. https://africacdc.org/download/laboratory-equipment-management-a-guidance-to-african-union-member-states/

Orekan J, Barbé B, Oeng S, Ronat Jb, Letchford J, Jacobs J et al. Culture media for clinical bacteriology in low- and middle-income countries: challenges, best practices for preparation and recommendations for improved access. Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Internet]. 2021 Oct [cited 2023 Jul 21];27(10). https://pubmed.ncbi.nlm.nih.gov/34015533/

Feagins AR, Vuong J, Fernandez K, Njanpop-Lafourcade BM, Mwenda JM, Sanogo YO, et al. The strengthening of Laboratory systems in the Meningitis Belt to improve Meningitis Surveillance, 2008–2018: a Partners’ perspective. J Infect Dis. 2019;220(Supplement4):S175–81.

Article  PubMed  Google Scholar 

IVD Risk-based Classification | WHO -. Prequalification of Medical Products (IVDs, Medicines, Vaccines and Immunization Devices, Vector Control) [Internet]. [cited 2023 Nov 9]. https://extranet.who.int/prequal/vitro-diagnostics/ivd-risk-based-classification

Mo Y, Ding Y, Cao Y, Ashley Ea JH, Waithira N et al. ACORN (A Clinically-Oriented Antimicrobial Resistance Surveillance Network) II: protocol for case based antimicrobial resistance surveillance. Wellcome open research [Internet]. 2023 Aug 16 [cited 2024 Jun 10];8. https://pubmed.ncbi.nlm.nih.gov/37854055/

Wertheim HFL, Huong VTL, Kuijper EJ. Clinical microbiology laboratories in low-resource settings, it is not only about equipment and reagents, but also good governance for sustainability. Clin Microbiol Infect. 2021;27(10):1389–90.

Article  PubMed  Google Scholar 

Lab-system-strengthening-maputo-. declaration-200850aaec2a-1644-4209-801a-cb477d270e2e.pdf [Internet]. [cited 2023 Nov 9]. https://cdn.who.int/media/docs/default-source/inaugural-who-partners-forum/lab-system-strengthening-maputo-declaration-200850aaec2a-1644-4209-801a-cb477d270e2e.pdf?sfvrsn=9d2694f0_1&download=true

African union. Africa common position on antimicrobial resistance: third session of the Specialised Technical Committee on Health, Population and Drug Control (STC-HPDC-3) Cairo, Egypt, 29 july-31 July 2019 [internet]. African Union; 2019 [cited 2023 Dec 27]. https://au.int/sites/default/files/newsevents/workingdocuments/36768-wd-sa24481_e_original_africa_common_position_on_antimicrobial_resistance.pdf

留言 (0)

沒有登入
gif