A prebiotic diet intervention can restore faecal short chain fatty acids in Parkinson's Disease yet fails to restore the gut microbiome homeostasis

ABSTRACT

Despite extensive research, current treatment of Parkinson’s Disease (PD) remains symptomatic and disease modifying approaches are urgently required. A promising approach is to target the gut-brain-axis by modifying the intestinal microbiota and the herein produced metabolites.

We decided to test this approach by modifying key metabolites of bacterial intestinal fermentation: short chain fatty acids (SCFA), known to be decreased in PD patients. A prospective, controlled pilot study was conducted in 11 couples, with one PD patient and healthy spouse as control (CO) each. Participants followed a 4-week diet rich in dietary fibre in addition to the intake of a prebiotic sirup (Lactulose). Metagenomes and metabolites of the gut microbiota, urinary metabolites and clinical characteristics were assessed.

The short-term dietary intervention significantly augmented gastrointestinal SCFA production, likely associated with increased Bifidobacteria spp. PD associated gastrointestinal symptoms improved with increasing SCFA levels. The pre-existing bacterial dysbiosis associated with PD, such as depletion of genera Blautia, Dorea, and Erysipelatoclostridium in PD, persisted within the study period. Some pathobionts, i.e. Klebsiella, were reduced after the intervention. Bacterial metabolite composition (both faecal and urine metabolomes) shifted towards the composition of the healthy control in PD after the intervention. Among these brain-relevant gut metabolic functions improved in PD patients, such as S-Adenosyl methionine (SAM), 3,4-Dihydroxyphenylacetic acid (DOPAC), Glutathione (GSH), Tryptophan and inositol related changes, involved in neuroprotective and antioxidant pathways.

Despite the small cohort size and short-term study period a minor dietary intervention was sufficient to improve gastrointestinal symptoms in PD and altered metabolic parameters in a presumed neuroprotective manner, warranting further investigation in larger cohorts.

Competing Interest Statement

The authors have declared no competing interest.

Clinical Trial

DRKS00034528

Funding Statement

This study was funded by the Hilde-Ulrichs-Foundation for Parkinson's research. This research was also supported by the BBSRC Institute Strategic Programme (ISP) Food Microbiome and Health BB/X011054/1 and its constituent project BBS/E/F/000PR13631, the BBSRC Core Capability Grant BB/CCG2260/1 and its constituent project BBS/E/QU/23NB0006, the ISP Decoding Biodiversity BBX011089/1, projects BBS/E/ER/230002A and BBS/E/ER/230002B, and Cellular Genomics Cellular Genomics BBX011070/1, project BBS/E/ER/230001A. The funders played no role in study design, data collection, analysis and interpretation of data, or the writing of this manuscript. JRB was supported by a local grant (FEMHabil) at the medical faculty of the University Hospital Bonn. FH was supported by European Research Council H2020 StG (erc-stg-948219, EPYC). We thank Lia Mareen Taube for her support during the study performance.

Author Declarations

I confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained.

Yes

The details of the IRB/oversight body that provided approval or exemption for the research described are given below:

The ethics committee of the University of Bonn, Germany, gave ethical approval for this work (internal ethics vote 145/17).

I confirm that all necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived, and that any patient/participant/sample identifiers included were not known to anyone (e.g., hospital staff, patients or participants themselves) outside the research group so cannot be used to identify individuals.

Yes

I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance).

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I have followed all appropriate research reporting guidelines, such as any relevant EQUATOR Network research reporting checklist(s) and other pertinent material, if applicable.

Yes

Data availability

The metagenomic sequencing data generated and/ analysed during the current study is available in the European Nucleotide Archive, ENA repository, PRJEB57228. Further data types are available upon request from the corresponding authors.

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