Detection of Common Deletion Mutations in HBA gene and Genotype-Phenotype Correlation

Abstract

Background and Objectives: Microcytic hypochromic anemia is the most common feature of alpha-thalassemia and depends on the number of alpha genes deleted. Therefore, in this study, we aim to determine the most common deletion mutations among microcytic anemia cases of West Bengal and correlate them with different biochemical parameters and endophenotypes. Methods: Two hundred and sixty patients with microcytic anemia were recruited. The GAP-PCR technique was adopted to identify the 3.7 kb and 4.2 kb deletion mutation in the HBA gene. Results: Forty patients were found to have either 3.7 kb or 4.2 kb deletion mutations which represents ~15.38% of the microcytic anemia patient population. A statistically significant lowering of MCH values (P = 0.02) and elevated levels of Total Bilirubin (P = 0.0001), direct bilirubin (P = 0.0004), unconjugated bilirubin (P = 0.0001), SGPT (P = 0.005), SGOT (P = 0.005), ALP (P = 0.008), RBC count (P = 0.01) and Hemoglobin level (P = 0.02) were observed among the alpha-thalassemia mutation carriers than non-mutant. The study failed to show any correlation between mutation status disease severity and gender bias. Conclusion: The two common deletion mutations (-3.7 kb or -4.2 kb) in the HBA gene are most commonly found in microcytic anemia cases of West Bengal and can be correlated with several biochemical parameters.

Competing Interest Statement

The authors have declared no competing interest.

Funding Statement

Supported by grants from the Department of Biotechnology, Ministry of Science & Technology, Govt. of India (BT/NIDAN/01/05/2018) and Institutional Research Promotion, Nil Ratan Sircar Medical College, Govt. of West Bengal.

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All procedures performed in studies involving human participants were in accordance with the ethical standards of the Nil Ratan Sircar Medical College & Hospital, Kolkata, India. The Ethics Committees (Nil Ratan Sircar Medical College & Hospital, Kolkata, India) of the abovementioned Institutes approved the study protocol. Informed consent was taken as per guidelines of the Indian Council of Medical Research, National Ethical Guidelines for Biomedical and Health Research involving human participants, India.

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Data Availability

The data that support the findings of this study are available from the corresponding author upon request.

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