Ghosh D, Saha M, Sana B, Mukherjee J (2005) Marine enzymes. Adv Biochem Eng Biotechnol 96:189–218. https://doi.org/10.1007/b135785

Article  CAS  Google Scholar 

Zhang C, Kim SK (2010) Research and application of marine microbial enzymes: status and prospects. Mar Drugs 8:1920–1934. https://doi.org/10.3390/md8061920

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sang VT, Dat TTH, Vinh LB, Cuong LCV, Oanh PTT, Ha H, Kim YH, Anh HLT, Yang SY (2019) Coral and coral-associated microorganisms: a prolific source of potential bioactive natural products. Mar Drugs 17:468. https://doi.org/10.3390/md1708046

Article  CAS  PubMed  PubMed Central  Google Scholar 

Park S, Park JM, Kang CH, Yoon JH (2015) Aliiroseovarius pelagivivens gen. nov., sp. nov., isolated from seawater, and reclassification of three species of the genus Roseovarius as Aliiroseovarius crassostreae comb. nov., Aliiroseovarius halocynthiae comb. nov. and Aliiroseovarius sediminilitoris comb. nov. Int J Syst Evol Microbiol 65:2646–2652. https://doi.org/10.1099/ijs.0.000315

Article  CAS  PubMed  Google Scholar 

Park S, Yoon JH (2013) Roseovarius sediminilitoris sp. nov., isolated from seashore sediment. Int J Syst Evol Microbiol 63:1741–1745. https://doi.org/10.1099/ijs.0.043737-0

Article  CAS  PubMed  Google Scholar 

Lei Z, Wang B, Lu Z, Wang N, Tan H, Zheng J, Jia Z (2020) New regulatory mechanism-based inhibitors of aspartate transcarbamoylase for potential anticancer drug development. FEBS J 287:3579–3599. https://doi.org/10.1111/febs.15220

Article  CAS  PubMed  Google Scholar 

Liang KYH, Orata FD, Boucher YF, Case RJ (2021) Roseobacters in a sea of poly- and paraphyly: whole genome-based taxonomy of the family Rhodobacteraceae and the proposal for the split of the “Roseobacter clade” into a novel family, Roseobacteraceae fam. nov. Front Microbiol 12:683109. https://doi.org/10.3389/fmicb.2021.683109

Article  PubMed  PubMed Central  Google Scholar 

Birolli WG, Lima RN, Porto ALM (2019) Applications of marine-derived microorganisms and their enzymes in biocatalysis and biotransformation, the underexplored potentials. Front Microbiol 10:1453. https://doi.org/10.3389/fmicb.2019.01453

Article  PubMed  PubMed Central  Google Scholar 

Su H, Xiao Z, Yu K, Huang Q, Wang G, Wang Y, Liang J, Huang W, Huang X, Wei F, Chen B (2020) Diversity of cultivable protease-producing bacteria and their extracellular proteases associated to scleractinian corals. PeerJ 8:e9055. https://doi.org/10.7717/peerj.9055

Article  PubMed  PubMed Central  Google Scholar 

Su H, Xiao Z, Yu K, Zhang Q, Lu C, Wang G, Wang Y, Liang J, Huang W, Huang X, Wei F (2021) High diversity of β-glucosidase-producing bacteria and their genes associated with scleractinian corals. Int J Mol Sci 22:3523. https://doi.org/10.3390/ijms22073523

Article  CAS  PubMed  PubMed Central  Google Scholar 

Garrity GM, Bell JA, Lilburn T (2005) Family I. Rhodobacteraceae fam. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey’s manual of systematic bacteriology, vol 2, 2nd edn. Springer, New York

Google Scholar 

Garrity GM, Bell JA, Lilburn T (2005) Class I. Alphaproteobacteria class. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey’s manual of systematic bacteriology, vol 2, 2nd edn. Springer, New York

Google Scholar 

Stackebrandt E, Murray RGE, Trüper HG (1988) Proteobacteria classis nov., a name for the phylogenetic taxon that includes the “purple bacteria and their relatives.” Int J Syst Bacteriol 38:321–325. https://doi.org/10.1099/00207713-38-3-321

Article  Google Scholar 

Foesel BU, Drake HL, Schramm A (2011) Defluviimonas denitrificans gen. nov., sp. nov., and Pararhodobacter aggregans gen. nov., sp. nov., non-phototrophic Rhodobacteraceae from the biofilter of a marine aquaculture. Syst Appl Microbiol 34:498–502. https://doi.org/10.1016/j.syapm.2011.08.006

Article  CAS  PubMed  Google Scholar 

Giovannoni SJ, Rappé M (2000) Evolution, diversity, and molecular ecology of marine prokaryotes. In: Kirchman D (ed) Microbial ecology of the oceans. Wiley, New York, pp 47–84

Google Scholar 

Boettcher KJ, Geaghan KK, Maloy AP, Barber BJ (2005) Roseovarius crassostreae sp. nov., a member of the Roseobacter clade and the apparent cause of juvenile oyster disease (JOD) in cultured Eastern oysters. Int J Syst Evol Microbiol 55:1531–1537. https://doi.org/10.1099/ijs.0.63620-0

Article  CAS  PubMed  Google Scholar 

Kim YO, Kong HJ, Park S, Kang SJ, Kim WJ, Kim KK, Oh TK, Yoon JH (2012) Roseovarius halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi. Int J Syst Evol Microbiol 62:931–936. https://doi.org/10.1099/ijs.0.031674-0

Article  CAS  PubMed  Google Scholar 

Dobritsa AP, Samadpour M (2016) The status of the genus Pseudoroseovarius Sun et al. 2015. Int J Syst Evol Microbiol 66:4960–4962. https://doi.org/10.1099/ijsem.0.001452

Article  CAS  PubMed  Google Scholar 

Sun C, Pan J, Zhang XQ, Su Y, Wu M (2015) Pseudoroseovarius zhejiangensis gen. nov., sp. nov., a novel alpha-proteobacterium isolated from the chemical wastewater, and reclassification of Roseovarius crassostreae as Pseudoroseovarius crassostreae comb. nov., Roseovarius sediminilitoris as Pseudoroseovarius sediminilitoris comb. nov. and Roseovarius halocynthiae as Pseudoroseovarius halocynthiae comb. nov. Antonie Van Leeuwenhoek 108:291–299. https://doi.org/10.1007/s10482-015-0480-9

Article  CAS  PubMed  Google Scholar 

Wang Y, Zhang Y, Guo C, Liu T, Dai Y, Lin M, Cui C, Zhang Y, Zhou C, Zhu W (2020) Aliiroseovarius marinus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 70:334–339. https://doi.org/10.1099/ijsem.0.003757

Article  CAS  PubMed  Google Scholar 

Zheng R, Ping XY, Fang Q, Lu DC, Du ZJ, Gong Y (2023) Aliiroseovarius subalbicans sp. nov. and Aliiroseovarius sediminis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol. https://doi.org/10.1099/ijsem.0.005738

Article  PubMed  Google Scholar 

Colwell RR (1970) Polyphasic taxonomy of the genus Vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species. J Bacteriol 104:410–433. https://doi.org/10.1128/jb.104.1.410-433.1970

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yoon J, Lee KC, Lee JS (2016) Cribrihabitans pelagius sp. nov., a marine alphaproteobacterium isolated from seawater. Int J Syst Evol Microbiol 66:3195–3200. https://doi.org/10.1099/ijsem.0.001171

Article  CAS  PubMed  Google Scholar 

Power DA, Johnson JA (2009) Difco™ and BBL™ manual: manual of microbiological culture media, 2nd edn. Becton Dickinson and Company, Sparks, pp 359–360 (ISBN 0-9727207-1-5)

Atlas RM, Parks LC (eds) (1993) Handbook of microbiological media. CRC Press, Boca Raton

Google Scholar 

Hansen GH, Sørheim R (1991) Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 13:231–241. https://doi.org/10.1016/0167-7012(91)90049-V

Article  Google Scholar 

Ten LN, Im WT, Kim MK, Kang MS, Lee ST (2004) Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J Microbiol Methods 56:375–382. https://doi.org/10.1016/j.mimet.2003.11.008

Article  CAS  PubMed  Google Scholar 

Yoon J (2022) Spongiibacter thalassae sp. nov., a marine gammaproteobacterium isolated from seawater. Arch Microbiol 204:273. https://doi.org/10.1007/s00203-022-02888-9

Article  CAS  PubMed  Google Scholar 

Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA (2013) Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J Comput Biol 20:714–737. https://doi.org/10.1089/cmb.2013.0084

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44:6614–6624. https://doi.org/10.1093/nar/gkw569

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rodriguez-R LM, Konstantinidis KT (2016) The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints 4:e1900v1. https://doi.org/10.7287/peerj.preprints.1900v1

Article  Google Scholar 

Meier-Kolthoff JP, Klenk HP, Göker M (2014) Taxonomic use of DNA G + C content and DNA–DNA hybridization in the genomic age. Int J Syst Evol Microbiol 64:352–356. https://doi.org/10.1099/ijs.0.056994-0

Article  CAS  PubMed  Google Scholar 

Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, da Costa MS, Rooney AP, Yi H, Xu XW, Meyer SD, Trujillo ME (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461–466. https://doi.org/10.1099/ijsem.0.002516

Article  CAS  PubMed  Google Scholar 

Konstantinidis KT, Tiedje JM (2005) Genomic insights that advance the species defnition for prokaryotes. Proc Natl Acad Sci USA 102:2567–2572. https://doi.org/10.1073/pnas.0409727102

Article  CAS  PubMed  PubMed Central