Lederberg, J., Cavalli, L. L. & Lederberg, E. M. Sex compatibility in Escherichia Coli. Genetics 37, 720–730 (1952).
Article CAS PubMed PubMed Central Google Scholar
Elisabeth, G., Günther, M. & Manuel, E. Conjugative plasmid transfer in gram-positive bacteria. Microbiol. Mol. Biol. Rev. 67, 277–301 (2003).
de la Cruz, F., Frost, L. S., Meyer, R. J. & Zechner, E. L. Conjugative DNA metabolism in Gram-negative bacteria. FEMS Microbiol. Rev. 34, 18–40 (2010).
Ramirez, M. S., Traglia, G. M., Lin, D. L., Tran, T. & Tolmasky, M. E. Plasmid-mediated antibiotic resistance and virulence in gram-negatives: the Klebsiella pneumoniae paradigm. Microbiol. Spectr. 2, 1–15 (2014).
Article CAS PubMed Google Scholar
Montero, I., Herrero-Fresno, A., Rodicio, R. & Rodicio, M. R. Efficient mobilization of a resistance derivative of pSLT, the virulence plasmid specific of Salmonella enterica serovar Typhimurium, by an IncI1 plasmid. Plasmid 70, 104–109 (2013).
Article CAS PubMed Google Scholar
Cossu, M. et al. Flipping chromosomes in deep-sea archaea. PLoS Genet. 13, e1006847 (2017).
Article PubMed PubMed Central Google Scholar
Tamminen, M., Virta, M., Fani, R. & Fondi, M. Large-scale analysis of plasmid relationships through gene-sharing networks. Mol. Biol. Evol. 29, 1225–1240 (2012).
Article CAS PubMed Google Scholar
Basta, T., Smyth, J., Forterre, P., Prangishvili, D. & Peng, X. Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Mol. Microbiol. 71, 23–34 (2009).
Article CAS PubMed Google Scholar
Prangishvili, D. et al. Conjugation in Archaea: frequent occurrence of conjugative plasmids in Sulfolobus. Plasmid 40, 190–202 (1998).
Article CAS PubMed Google Scholar
Guglielmini, J., de la Cruz, F. & Rocha, E. P. C. Evolution of conjugation and type IV secretion systems. Mol. Biol. Evol. 30, 315–331 (2013).
Article CAS PubMed Google Scholar
Lepage, E. et al. Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl. Environ. Microbiol. 70, 1277–1286 (2004).
Article CAS PubMed PubMed Central Google Scholar
Gorlas, A. et al. Thermococcus nautili sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal deep-sea vent. Int. J. Syst. Evol. Microbiol. 64, 1802–1810 (2014).
Article CAS PubMed Google Scholar
Soler, N. et al. Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res. 38, 5088–5104 (2010).
Article CAS PubMed PubMed Central Google Scholar
Alain, K. et al. Thermococcus henrietii sp. nov., a novel extreme thermophilic and piezophilic sulfur-reducing archaeon isolated from a deep-sea hydrothermal chimney. Int. J. Syst. Evol. Microbiol. 71, https://doi.org/10.1099/ijsem.0.004895 (2021).
Strang, L. C. Genomic Insights and Ecological Adaptations of Deep-Subsurface and Near Subsurface Thermococcus Isolates (Western Washington Univ., 2020).
Gehring, A. M. et al. Genome replication in Thermococcus kodakarensis independent of Cdc6 and an origin of replication. Front. Microbiol. 8, 2084 (2017).
Article PubMed PubMed Central Google Scholar
Freeman, J. M., Plasterer, T. N., Smith, T. F. & Mohr, S. C. Patterns of genome organization in bacteria. Science https://doi.org/10.1126/science.279.5358.1827a (1998).
Díaz-Orejas, R., Espinosa, M. & Yeo, C. C. The importance of the expendable: toxin-antitoxin genes in plasmids and chromosomes. Front. Microbiol. 8, 1479 (2017).
Article PubMed PubMed Central Google Scholar
Guynet, C. & de la Cruz, F. Plasmid segregation without partition. Mob. Genet. Elem. 1, 236–241 (2011).
Krupovic, M., Gribaldo, S., Bamford, D. H. & Forterre, P. The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol. Biol. Evol. 27, 2716–2732 (2010).
Article CAS PubMed Google Scholar
Grohmann, E., Christie, P. J., Waksman, G. & Backert, S. Type IV secretion in Gram-negative and Gram-positive bacteria. Mol. Microbiol. 107, 455–471 (2018).
Article CAS PubMed PubMed Central Google Scholar
Terns, M. P. & Terns, R. M. CRISPR-based adaptive immune systems. Curr. Opin. Microbiol. 14, 321–327 (2011).
Article CAS PubMed PubMed Central Google Scholar
Pinilla-Redondo, R. et al. Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids. Nucleic Acids Res. https://doi.org/10.1093/nar/gkz1197 (2019).
Article PubMed Central Google Scholar
Atomi, H., Imanaka, T. & Fukui, T. Overview of the genetic tools in the Archaea. Front. Microbiol. 3, 337 (2012).
Article PubMed PubMed Central Google Scholar
Elmore, J. R. et al. Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis. RNA Biol. 10, 828–840 (2013).
Article CAS PubMed PubMed Central Google Scholar
Matsumi, R., Manabe, K., Fukui, T., Atomi, H. & Imanaka, T. Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance. J. Bacteriol. 189, 2683–2691 (2007).
Article CAS PubMed PubMed Central Google Scholar
Naor, A. & Gophna, U. Cell fusion and hybrids in Archaea: prospects for genome shuffling and accelerated strain development for biotechnology. Bioengineered 4, 126–129 (2013).
Sato, T., Fukui, T., Atomi, H. & Imanaka, T. Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J. Bacteriol. 185, 210–220 (2003).
Article CAS PubMed PubMed Central Google Scholar
Forterre, P., Da Cunha, V. & Catchpole, R. Plasmid vesicles mimicking virions. Nat. Microbiol. 2, 1340–1341 (2017).
Article CAS PubMed Google Scholar
Erdmann, S., Tschitschko, B., Zhong, L., Raftery, M. J. & Cavicchioli, R. A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells. Nat. Microbiol. 2, 1446–1455 (2017).
Article CAS PubMed Google Scholar
Willetts, N. & Wilkins, B. Processing of plasmid DNA during bacterial conjugation. Microbiol. Rev. 48, 24–41 (1984).
Article CAS PubMed PubMed Central Google Scholar
Zatyka, M. & Thomas, C. M. Control of genes for conjugative transfer of plasmids and other mobile elements. FEMS Microbiol. Rev. 21, 291–319 (1998).
Article CAS PubMed Google Scholar
Guglielmini, J. et al. Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion. Nucleic Acids Res. 42, 5715–5727 (2014).
Article CAS PubMed PubMed Central Google Scholar
Draper, O., César, C. E., Machón, C., de la Cruz, F. & Llosa, M. Site-specific recombinase and integrase activities of a conjugative relaxase in recipient cells. Proc. Natl Acad. Sci. USA 102, 16385–16390 (2005).
Article CAS PubMed PubMed Central Google Scholar
Fiala, G., Stetter, K. O., Jannasch, H. W., Langworthy, T. A. & Madon, J. Staphylothermus marinus sp. nov. represents a novel genus of extremely thermophilic submarine heterotrophic archaebacteria growing up to 98 °C. Syst. Appl. Microbiol. 8, 106–113 (1986).
Zhang, C., Cooper, T. E., Krause, D. J. & Whitaker, R. J. Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophy. Appl. Environ. Microbiol. 79, 5539–5549 (2013).
Article CAS PubMed PubMed Central Google Scholar
Erauso, G. et al. Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Arch. Microbiol. 160, 338–349 (1993).
Wagner, A. et al. Mechanisms of gene flow in archaea. Nat. Rev. Microbiol. 15, 492–501 (2017).
Article CAS PubMed Google Scholar
Albers, S.-V. & Meyer, B. H. The archaeal cell envelope. Nat. Rev. Microbiol. 9, 414–426 (2011).
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