Phyllosphere microbiome induces host metabolic defence against rice false-smut disease

Zhan, C., Matsumoto, H., Liu, Y. & Wang, M. Pathways to engineering the phyllosphere microbiome for sustainable crop production. Nat. Food 3, 997–1004 (2022).

Article  Google Scholar 

Zhang, Y. et al. Specific adaptation of Ustilaginoidea virens in occupying host florets revealed by comparative and functional genomics. Nat. Commun. https://doi.org/10.1038/Ncomms4849 (2014).

Arya, G. C. & Harel, A. In Microbial Genomics in Sustainable Agroecosystems (eds Tripathi, V. et al.) 39–65 (Springer, 2019).

Fan, X. et al. Microenvironmental interplay predominated by beneficial Aspergillus abates fungal pathogen incidence in paddy environment. Environ. Sci. Technol. https://doi.org/10.1021/acs.est.9b04616 (2019).

Cheng, Y. T., Zhang, L. & He, S. Y. Plant-microbe interactions facing environmental challenge. Cell Host Microbe 26, 183–192 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cao, M. et al. Track of fate and primary metabolism of trifloxystrobin in rice paddy ecosystem. Sci. Total Environ. 518-519, 417–423 (2015).

Article  CAS  PubMed  Google Scholar 

Wang, M. et al. Multiple spectroscopic analyses reveal the fate and metabolism of sulfamide herbicide triafamone in agricultural environments. Environ. Pollut. 230, 107–115 (2017).

Article  CAS  PubMed  Google Scholar 

Fan, X. et al. Keystone taxa-mediated bacteriome response shapes the resilience of the paddy ecosystem to fungicide triadimefon contamination. J. Hazard. Mater. 417, 126061 (2021).

Article  CAS  PubMed  Google Scholar 

Sun, W. et al. Ustilaginoidea virens: insights into an emerging rice pathogen. Ann. Rev. Phytopathol. https://doi.org/10.1146/annurev-phyto-010820-012908 (2020).

Zhou, Y. et al. PCR‐based specific detection of Ustilaginoidea virens and Ephelis japonica. J. Phytopathol. 151, 513–518 (2003).

Article  CAS  Google Scholar 

Yi, M. & Valent, B. Communication between filamentous pathogens and plants at the biotrophic interface. Annu. Rev. Phytopathol. 51, 587–611 (2013).

Article  CAS  PubMed  Google Scholar 

Jennings, D. H. In Nitrogen, Phosphorus and Sulphur Utilization by Fungi (eds Boddy, L. et al.) Ch 1 (Cambridge University Press, 1989).

Ashizawa, T., Takahashi, M., Arai, M. & Arie, T. Rice false smut pathogen, Ustilaginoidea virens, invades through small gap at the apex of a rice spikelet before heading. J. Gen. Plant Pathol. 78, 255–259 (2012).

Article  Google Scholar 

Hu, M., Luo, L., Wang, S., Liu, Y. & Li, J. Infection processes of Ustilaginoidea virens during artificial inoculation of rice panicles. Eur. J. Plant Pathol. 139, 67–77 (2014).

Article  Google Scholar 

Li, Y. et al. Towards understanding the biosynthetic pathway for ustilaginoidin mycotoxins in Ustilaginoidea virens. Environ. Microbiol. 21, 2629–2643 (2019).

Article  CAS  PubMed  Google Scholar 

Cheng, S. et al. Occurrence of the fungus mycotoxin, ustiloxin A, in surface waters of paddy fields in Enshi, Hubei, China, and toxicity in Tetrahymena thermophila. Environ. Pollut. 251, 901–909 (2019).

Article  CAS  PubMed  Google Scholar 

Wang, M. & Cernava, T. Overhauling the assessment of agrochemical-driven interferences with microbial communities for improved global ecosystem integrity. Environ. Sci. Ecotechnol. 4, 100061 (2020).

Article  PubMed  PubMed Central  Google Scholar 

Matsumoto, H. et al. Bacterial seed endophyte shapes disease resistance in rice. Nat. Plants 7, 60–72 (2021).

Article  CAS  PubMed  Google Scholar 

Peixoto, R. S. et al. Harnessing the microbiome to prevent global biodiversity loss. Nat. Microbiol. 7, 1726–1735 (2022).

Article  CAS  PubMed  Google Scholar 

Nobori, T. et al. Dissecting the cotranscriptome landscape of plants and their microbiota. EMBO Rep. 23, e55380 (2022).

Article  CAS  PubMed  Google Scholar 

Chaparro, J. M., Badri, D. V. & Vivanco, J. M. Rhizosphere microbiome assemblage is affected by plant development. ISME J. 8, 790–803 (2014).

Article  CAS  PubMed  Google Scholar 

Huang, A. C. et al. A specialized metabolic network selectively modulates Arabidopsis root microbiota. Science 364, eaau6389 (2019).

Article  CAS  PubMed  Google Scholar 

Jacoby, R. P., Koprivova, A. & Kopriva, S. Pinpointing secondary metabolites that shape the composition and function of the plant microbiome. J. Exp. Bot. 72, 57–69 (2021).

Article  CAS  PubMed  Google Scholar 

Korenblum, E. et al. Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling. Proc. Natl Acad. Sci. USA 117, 3874–3883 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu, H., Brettell, L. E. & Singh, B. Linking the phyllosphere microbiome to plant health. Trends Plant Sci. 25, 841–844 (2020).

Article  CAS  PubMed  Google Scholar 

Vorholt, J. A. Microbial life in the phyllosphere. Nat. Rev. Microbiol. 10, 828–840 (2012).

Article  CAS  PubMed  Google Scholar 

Vorholt, J. A., Vogel, C., Carlstrom, C. I. & Muller, D. B. Establishing causality: opportunities of synthetic communities for plant microbiome research. Cell Host Microbe 22, 142–155 (2017).

Article  CAS  PubMed  Google Scholar 

Matsumoto, H. et al. Reprogramming of phytopathogen transcriptome by a non-bactericidal pesticide residue alleviates its virulence in rice. Fund. Res. https://doi.org/10.1016/j.fmre.2021.12.012 (2022).

Hossain, G. S. et al. L-amino acid oxidases from microbial sources: types, properties, functions, and applications. Appl. Microbiol. Biotechnol. 98, 1507–1515 (2014).

Article  CAS  PubMed  Google Scholar 

Hui, L. et al. Lack of trehalose accelerates H2O2-induced Candida albicans apoptosis through regulating Ca2+ signaling pathway and caspase activity. PLoS ONE 6, e15808 (2011).

Article  Google Scholar 

Berendsen, R. L., Pieterse, C. M. & Bakker, P. A. The rhizosphere microbiome and plant health. Trends Plant Sci. 17, 478–486 (2012).

Article  CAS  PubMed  Google Scholar 

Toju, H. et al. Core microbiomes for sustainable agroecosystems. Nat. Plants 4, 247–257 (2018).

Article  PubMed  Google Scholar 

Chen, Y. et al. Wheat microbiome bacteria can reduce virulence of a plant pathogenic fungus by altering histone acetylation. Nat. Commun. https://doi.org/10.1038/s41467-018-05683-7 (2018).

Wang, J. et al. Post-translational regulation of autophagy is involved in intra-microbiome suppression of fungal pathogens. Microbiome 9, 131 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pang, Z. et al. Linking plant secondary metabolites and plant microbiomes: a review. Front. Plant Sci. https://doi.org/10.3389/fpls.2021.621276 (2021).

Corredor-Moreno, P. et al. The branched-chain amino acid aminotransferase TaBCAT1 modulates amino acid metabolism and positively regulates wheat rust susceptibility. Plant Cell https://doi.org/10.1093/plcell/koab049 (2021).

Galluzzi, L. et al. Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018. Cell Death Differ. 25, 486–541 (2018).

Article  PubMed  PubMed Central  Google Scholar 

Hardwick, J. M. Do fungi undergo apoptosis-like programmed cell death. mBio 9, e00948-18 (2018).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Singkum, P. et al. Suppression of the pathogenicity of Candida albicans by the quorum-sensing molecules farnesol and tryptophol. J. Gen. Appl. Microbiol. 65, 277–283 (2020).

Article  PubMed  Google Scholar 

Chen, L., Ma, Y., Peng, M., Chen, W. & Li, H. Analysis of apoptosis-related genes reveals that apoptosis functions in conidiation and pathogenesis of Fusarium pseudograminearum. mSphere 6, e01140-20 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chialva, M., Lanfranco, L. & Bonfante, P. The plant microbiota: composition, functions, and engineering. Curr. Opin. Biotechnol. 73, 135–142 (2022).

Article  CAS  PubMed  Google Scholar 

Koiso, Y. et al. Isolation and structure of an antimitotic cyclic peptide, ustiloxin F: chemical interrelation with a homologous peptide, ustiloxin B. J. Antibiot. https://doi.org/10.7164/antibiotics.51.418 (2010).

Article  Google Scholar 

Ashizawa, T., Takahashi, M., Moriwaki, J. & Hirayae, K. Quantification of the rice false smut pathogen Ustilaginoidea virens from soil in Japan using real-time PCR. Eur. J. Plant Pathol. 128, 221–232 (2010).

Article  CAS  Google Scholar 

Bolyen, E. et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat. Biotechnol. 37, 852–857 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gill, S. R. et al. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355–1359 (2006).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen, H. & Jiang, W. Application of high-throughput sequencing in understanding human oral microbiome related with health and disease. Front. Microbiol. 5, 508 (2014).

Article 

留言 (0)

沒有登入
gif