Structural basis for TBP displacement from TATA box DNA by the Swi2/Snf2 ATPase Mot1

Fairman-Williams, M. E., Guenther, U. P. & Jankowsky, E. SF1 and SF2 helicases: family matters. Curr. Opin. Struct. Biol. 20, 313–324 (2010).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Clapier, C. R., Iwasa, J., Cairns, B. R. & Peterson, C. L. Mechanisms of action and regulation of ATP-dependent chromatin-remodellingcomplexes. Nat. Rev. Mol. Cell Biol. 18, 407–422 (2017).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jungblut, A., Hopfner, K. P. & Eustermann, S. Megadalton chromatin remodelers: common principles for versatile functions. Curr. Opin. Struct. Biol. 64, 134–144 (2020).

Article  CAS  PubMed  Google Scholar 

Yan, L. & Chen, Z. A unifying mechanism of DNA translocation underlying chromatin remodeling. Trends Biochem. Sci. 45, 217–227 (2020).

Article  CAS  PubMed  Google Scholar 

Mueller-Planitz, F., Klinker, H. & Becker, P. B. Nucleosome sliding mechanisms: new twists in a looped history. Nat. Struct. Mol. Biol. 20, 1026–1032 (2013).

Article  CAS  PubMed  Google Scholar 

Farnung, L., Vos, S. M., Wigge, C. & Cramer, P. Nucleosome–Chd1 structure and implications for chromatin remodelling. Nature 550, 539–542 (2017).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li, M. et al. Mechanism of DNA translocation underlying chromatin remodelling by Snf2. Nature 567, 409–413 (2019).

Article  CAS  PubMed  Google Scholar 

Eustermann, S. et al. Structural basis for ATP-dependent chromatin remodelling by the INO80 complex. Nature 556, 386–390 (2018).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Willhoft, O. et al. Structure and dynamics of the yeast SWR1: nucleosome complex. Science 362, eaat7716 (2018).

Article  PubMed  Google Scholar 

He, S. et al. Structure of nucleosome-bound human BAF complex. Science 367, 875–881 (2020).

Article  CAS  PubMed  Google Scholar 

Farnung, L., Ochmann, M., Engeholm, M. & Cramer, P. Structural basis of nucleosome transcription mediated by Chd1 and FACT. Nat. Struct. Mol. Biol. 28, 382–387 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dasgupta, A., Juedes, S. A., Sprouse, R. O. & Auble, D. T. Mot1-mediated control of transcription complex assembly and activity. EMBO J. 24, 1717–1729 (2005).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sprouse, R. O., Brenowitz, M. & Auble, D. T. Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA. EMBO J. 25, 1492–1504 (2006).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sprouse, R. O. et al. Function and structural organization of Mot1 bound to a natural target promoter. J. Biol. Chem. 283, 24935–24948 (2008).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zentner, G. E. & Henikoff, S. Mot1 redistributes TBP from TATA-containing to TATA-less promoters. Mol. Cell. Biol. 33, 4996–5004 (2013).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wollmann, P. et al. Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP. Nature 475, 403–407 (2011).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hopfner, K. P., Gerhold, C. B., Lakomek, K. & Wollmann, P. Swi2/Snf2 remodelers: hybrid views on hybrid molecular machines. Curr. Opin. Struct. Biol. 22, 225–233 (2012).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Butryn, A. et al. Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1. eLife 4, e07432 (2015).

Article  PubMed  PubMed Central  Google Scholar 

Butryn, A., Woike, S., Shetty, S. J., Auble, D. T. & Hopfner, K.-P. Crystal structure of the full Swi2/Snf2 remodeler Mot1 in the resting state. eLife 7, e37774 (2018).

Article  PubMed  PubMed Central  Google Scholar 

Auble, D. T. & Steggerda, S. M. Testing for DNA tracking by MOT1, a SNF2/SWI2 protein family member. Mol. Cell. Biol. 19, 412–423 (2015).

Article  Google Scholar 

Viswanathan, R., True, J. D. & Auble, D. T. Molecular mechanism of Mot1, a TATA-binding protein (TBP)-DNA dissociating enzyme. J. Biol. Chem. 291, 15714–15726 (2016).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Heiss, G. et al. Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation. Nucleic Acids Res. 47, 2793–2806 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Willhoft, O. et al. Crosstalk within a functional INO80 complex dimer regulates nucleosome sliding. eLife 6, e25782 (2017).

Article  PubMed  PubMed Central  Google Scholar 

Dürr, H., Körner, C., Müller, M., Hickmann, V. & Hopfner, K. P. X-ray structures of the sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA. Cell 121, 363–373 (2005).

Article  PubMed  Google Scholar 

Lewis, R., Dürr, H., Hopfner, K. P. & Michaelis, J. Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle. Nucleic Acids Res. 36, 1881–1890 (2008).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hauk, G., McKnight, J. N., Nodelman, I. M. & Bowman, G. D. The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor. Mol. Cell 39, 711–723 (2010).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Farnung, L., Vos, S. M., Wigge, C. & Cramer, P. Nucleosome-Chd1 structure and implications for chromatin remodelling. Nature 550, 539–542 (2017).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Moyle-Heyrman, G., Viswanathan, R., Widom, J. & Auble, D. T. Two-step mechanism for modifier of transcription 1 (Mot1) enzyme-catalyzed displacement of TATA-binding protein (TBP) from DNA. J. Biol. Chem. 287, 9002–9012 (2012).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu, X., Li, M., Xia, X., Li, X. & Chen, Z. Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure. Nature 544, 440–445 (2017).

Article  CAS  PubMed  Google Scholar 

Clapier, C. R., Verma, N., Parnell, T. J. & Cairns, B. R. Cancer-associated gain-of-function mutations activate a SWI/SNF-family regulatory hub. Mol. Cell 80, 712–725.e5 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Auble, D. T., Wang, D., Post, K. W. & Hahn, S. Molecular analysis of the SNF2 / SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA. Mol. Cell. Biol. 17, 4842–4851 (1997).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rehwinkel, J. & Gack, M. U. RIG-I-like receptors: their regulation and roles in RNA sensing. Nat. Rev. Immunol. 20, 537–551 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rawling, D. C., Kohlway, A. S., Luo, D., Ding, S. C. & Pyle, A. M. The RIG-I ATPase core has evolved a functional requirement for allosteric stabilization by the Pincer domain. Nucleic Acids Res. 42, 11601–11611 (2014).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Corradi, N., Pombert, J. F., Farinelli, L., Didier, E. S. & Keeling, P. J. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat. Commun. 1, 77 (2010).

Article  PubMed  Google Scholar 

Kokic, G., Wagner, F. R., Chernev, A., Urlaub, H. & Cramer, P. Structural basis of human transcription-DNA repair coupling. Nature 598, 368–372 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yan, C. et al. Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcr

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