Influence of the Poly(ADP-Ribose) Polymerase 1 Level on the Status of Base Excision Repair in Human Cells

Hegde M.L., Hazra T.K., Mitra S. 2008. Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. Cell Res. 18, 27–47.

Article  CAS  PubMed  Google Scholar 

Almeida K.H., Sobol R.W. 2007. A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification. DNA Repair. 6, 695–711.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Schärer O.D. 2003. Chemistry and biology of DNA repair. Angew. Chem. Int. Ed. Engl. 42, 2946–2974.

Article  PubMed  Google Scholar 

Frosina G., Fortini P., Rossi O., Carrozzino F., Raspaglio G., Cox L.S., Lane D.P., Abbondandolo A., Dogliotti E. 1996. Two pathways for base excision repair in mammalian cells. J. Biol. Chem. 271, 9573–9578.

Article  CAS  PubMed  Google Scholar 

Klungland A., Lindahl T. 1997. Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1). EMBO J. 16, 3341–3348.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Khodyreva S.N., Lavrik O.I. 2016. Poly(ADP-ribose) polymerase 1 as a key regulator of DNA repair. Mol. Biol. (Moscow). 50, 580–595.

Article  CAS  Google Scholar 

Langelier M.F., Eisemann T., Riccio A.A., Pascal J.M. 2018. PARP family enzymes: regulation and catalysis of the poly(ADP-ribose) posttranslational modification. Curr. Opin. Struct. Biol. 53, 187−198.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alemasova E.E., Lavrik O.I. 2019. Poly(ADP-ribosyl)ation by PARP1: reaction mechanism and regulatory proteins. Nucleic Acids Res. 47, 3811–3827.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hanzlikova H., Gittens W., Krejcikova K., Zeng Z., Caldecott K.W. 2017. Overlapping roles for PARP1 and PARP2 in the recruitment of endogenous XRCC1 and PNKP into oxidized chromatin. Nucleic Acids Res. 45, 2546–2557.

CAS  PubMed  Google Scholar 

De Vos M., Schreiber V., Dantzer F. 2012. The diverse roles and clinical relevance of PARPs in DNA damage repair: current state of the art. Biochem. Pharmacol. 84, 137–146.

Article  CAS  PubMed  Google Scholar 

Mortusewicz O., Amé J.-C., Schreiber V., Leonhardt H. 2007. Feedback-regulated poly(ADP-ribosyl)ation by PARP-1 is required for rapid response to DNA damage in living cells. Nucleic Acids Res. 35, 7665–7675.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sukhanova M.V., Khodyreva S.N., Lebedeva N.A., Prasad R., Wilson SH., Lavrik O.I. 2005. Human base excision repair enzymes apurinic/apyrimidinic endonuclease1 (APE1), DNA polymerase beta and poly(ADP-ribose) polymerase 1: interplay between strand-displacement DNA synthesis and proofreading exonuclease activity. Nucleic Acids Res. 33, 1222–1229.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Khodyreva S.N., Prasad R., Ilina E.S., Sukhanova M.V., Kutuzov M.M., Liu Y., Hou E.W., Wilson S.H., Lavrik O.I. 2010. Apurinic/apyrimidinic (AP) site recognition by the 5'-dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1). Proc. Natl. Acad. Sci. U. S. A. 107, 22090–22095.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kutuzov M.M., Khodyreva S.N., Ilina E.S., Sukhanova M.V., Amé J.C., Lavrik O.I. 2015. Interaction of PARP-2 with AP site containing DNA. Biochimie. 112, 10–19.

Article  CAS  PubMed  Google Scholar 

Sukhanova M.V., Hamon L., Kutuzov M.M., Joshi V., Abrakhi S., Dobra I., Curmi P.A., Pastre D., Lavrik O.I. 2019. A single-molecule atomic force microscopy study of PARP1 and PARP2 recognition of base excision repair DNA intermediates. J. Mol. Biol. 431, 2655–2673.

Article  CAS  PubMed  Google Scholar 

Kurgina T.A., Anarbaev R.O., Sukhanova M.V., Lavrik O.I. 2018). A rapid fluorescent method for the real-time measurement of poly(ADP-ribose) polymerase 1 activity. Anal. Biochem. 545, 91–97.

Article  CAS  PubMed  Google Scholar 

Matveeva E.A., Mathbout L.F., Fondufe-Mittendorf Y.N. 2019. PARP1 is a versatile factor in the regulation of mRNA stability and decay. Sci. Rep. 91, 1–12.

Google Scholar 

Belousova E.A., Ishchenko A.A., Lavrik O.I. 2018. DNA is a new target of PARP3. Sci. Rep. 8, 4176.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kosova A.A., Kutuzov M.M., Evdokimov A.N., Ilina E.S., Belousova E.A., Romanenko S.A., Trifonov V.A., Khodyreva S.N., Lavrik O.I. 2019. Poly(ADP-ribosyl)ation and DNA repair synthesis in the extracts of naked mole rat, mouse, and human cells. Aging (Albany NY). 11, 2852–2873.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Belousova E.A., Kutuzov M.M., Ivankina P.A., Ischenko A.A., Lavrik O.I. 2018. A new DNA break repair pathway involving PARP3 and base excision repair proteins. Dokl. Biochem. Biophys. 482, 233–237.

Article  CAS  PubMed  Google Scholar 

Talhaoui I., Lebedeva N.A., Zarkovic G., Saint-Pierre C., Kutuzov M.M., Sukhanova M.V., Matkarimov B.T., Gasparutto D., Saparbaev M.K., Lavrik O.I., Ishchenko A.A. 2016. Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro. Nucleic Acids Res. 44, 9279−9295.

CAS  PubMed  PubMed Central  Google Scholar 

Munnur D., Ahel I. 2017. Reversible mono-ADP-ribosylation of DNA breaks. FEBS J. 284, 4002–4016.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zarkovic G., Belousova E.A., Talhaoui I., Saint-Pierre C., Kutuzov M.M., Matkarimov B.T., Biard D., Gasparutto D., Lavrik O.I., Ishchenko A.A. 2018. Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: new insights into DNA ADP-ribosylation. Nucleic Acids Res. 46, 2417−2431.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lebedeva N.A., Khodyreva S.N., Favre A., Lavrik O.I. 2003. AP endonuclease 1 has no biologically significant 3'–5'-exonuclease activity. Biochem. Biophys. Res. Commun. 300, 182–187.

Article  CAS  PubMed  Google Scholar 

Drachkova I.A., Petruseva I.O., Safronov I.V., Zakharenko A.L., Shishkin G.V., Lavrik O.I., Khodyreva S.N. 2001. Reagents for modification of protein–nucleic acid complexes: II. Site-specific photomodification of mammalian DNA polymerase complexes with primers extended by dCTP exo-N-substituted arylazido derivatives, Russ. J. Bioorg. Chem. 27, 173–179.

Article  CAS  Google Scholar 

Amé J.C., Kalisch T., Dantzer F., Schreiber V. 2011. Purification of recombinant poly(ADP-ribose) polymerases. Methods Mol. Biol. 780, 135–152.

Article  PubMed  Google Scholar 

Biade S., Sobol R.W., Wilson S.H., Matsumoto Y. 1998. Impairment of proliferating cell nuclear antigen-dependent apurinic/apyrimidinic site repair on linear DNA. J. Biol. Chem. 273, 898–902.

Article  CAS  PubMed  Google Scholar 

Rio D.C., Ares M. Jr.., Hannon G.J., Nilsen T.W. 2010. Purification of RNA using TRIzol (TRI Reagent). Cold Spring Harb. Protoc. pdb.prot.5439.

Bradford M.A. 1976. Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal. Biochem. 72, 248–254.

Article  CAS  PubMed  Google Scholar 

Ilina E.S., Lavrik O.I., Khodyreva S.N. 2008. Ku antigen interacts with abasic sites. Biochim. Biophys. Acta. 1784, 1777–1785.

Article  CAS  PubMed  Google Scholar 

Ilina E.S., Khodyreva S.N., Lavrik O.I. 2018. Unusual interaction of human apurinic/apyrimidinic endonuclease 1 (APE1) with abasic sites via the Schiff-base-dependent mechanism. Biochimie. 150, 88–99.

Article  CAS  PubMed  Google Scholar 

Laemmli U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 277, 680–685.

Article  Google Scholar 

Sambrook J., Fritsch E.F., Maniatis T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press, 2nd ed.

Google Scholar 

Savelyev N.V., Shepelev N.M., Lavrik O.I., Rubtsova M.P., Dontsova O.A. 2021. PARP1 regulates the biogenesis and activity of telomerase complex through modification of H/ACA-proteins. Front. Cell Dev. Biol. 9, 621134.

Article  PubMed  PubMed Central  Google Scholar 

Doseth B., Visnes T., Wallenius A., Ericsson I., Sarno A., Pettersen HS., Flatberg A., Catterall T., Slupphaug G., Krokan H.E., Kavli B. 2011. Uracil-DNA glycosylase in base excision repair and adaptive immunity: Species differences between man and mouse. J. Biol. Chem. 286, 16669–16680.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Doseth B., Ekre C., Slupphaug G., Krokan H.E., Kavli B. 2012. Strikingly different properties of uracil-DNA glycosylases UNG2 and SMUG1 may explain divergent roles in processing of genomic uracil. DNA Repair (Amst.). 11, 587−593.

Article  CAS  PubMed 

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