Kaper JB, Morris JG, Levine MM. Cholera. Clin Microbiol Rev. 1995;8(1):48–86.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, et al. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature. 2011;477(7365):462–5.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sack DA, Sack RB, Nair GB, Siddique AK. Cholera. Lancet. 2004;363(9404):223–33.

Article  CAS  PubMed  Google Scholar 

Safa A, Nair GB, Kong RYC. Evolution of new variants of Vibrio cholerae O1. Trends Microbiol. 2010;18(1):46–54.

Article  CAS  PubMed  Google Scholar 

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq MM, et al. Vibrio cholerae O1 with reduced susceptibility to ciprofloxacin and azithromycin isolated from a rural coastal area of Bangladesh. Front Microbiol. 2017. https://doi.org/10.3389/fmicb.2017.00252.

Article  PubMed  PubMed Central  Google Scholar 

Kim EJ, Lee CH, Nair GB, Kim DW. Whole-genome sequence comparisons reveal the evolution of Vibrio cholerae O1. Trends Microbiol. 2015;23(8):479–89. https://doi.org/10.1016/j.tim.2015.03.010.

Article  CAS  PubMed  Google Scholar 

Ghosh P, Naha A, Pazhani GP, Ramamurthy T, Mukhopadhyay AK. Genetic traits of Vibrio cholerae O1 haitian isolates that are absent in contemporary strains from Kolkata India. PLoS ONE. 2014;9(11):112973.

Article  Google Scholar 

Kumar P, Mishra DK, Deshmukh DG, Jain M, Zade AM, Ingole KV, et al. Vibrio cholerae O1 Ogawa El Tor strains with the ctxB7 allele driving cholera outbreaks in south-western India in 2012. Infect Genet Evol. 2014;1(25):93–6.

Article  Google Scholar 

Rashid MU, Rashed SM, Islam T, Johura FT, Watanabe H, Ohnishi M, et al. CtxB1 outcompetes CtxB7 in Vibrio cholerae O1 Bangladesh. J Med Microbiol. 2016;65(1):101–3.

Article  PubMed  Google Scholar 

Rashed SM, Mannan SB, Johura tuz F, Tarequl Islam M, Sadique A, Watanabe H, et al. Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006–2011. J Med Microbiol. 2012;61(PART12):1736–45.

Article  PubMed  PubMed Central  Google Scholar 

Karlsson SL, Thomson N, Mutreja A, Connor T, Sur D, Ali M, et al. Retrospective analysis of serotype switching of Vibrio cholerae O1 in a cholera endemic region shows it is a non-random process. PLoS Negl Trop Dis. 2016;10:10.

Article  Google Scholar 

Baddam R, Sarker N, Ahmed D, Mazumder R, Abdullah A, Morshed R, et al. Genome dynamics of Vibrio cholerae isolates linked to seasonal outbreaks of cholera in Dhaka Bangladesh. MBio. 2020;11:1.

Article  Google Scholar 

LeGault KN, Hays SG, Angermeyer A, McKitterick AC, Johura FT, Sultana M, et al. Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts. Science. 2021;373(6554):1–29.

Article  Google Scholar 

Alam M, Sultana M, Nair GB, Siddique AK, Hasan NA, Sack RB, et al. Viable but nonculturable Vibrio cholerae O1 in biofilms in the aquatic environment and their role in cholera transmission. Proc Natl Acad Sci USA. 2007. https://doi.org/10.1073/pnas.0705599104.

Article  PubMed  PubMed Central  Google Scholar 

Pereckaite L, Tatarunas V, Giedraitiene A. Current antimicrobial susceptibility testing for beta-lactamase-producing enterobacteriaceae in clinical settings. J Microbiol Methods. 2018;1(152):154–64.

Article  Google Scholar 

Thungapathra M, Sinha KK, Chaudhuri SR, Garg P, Ramamurthy T, Nair GB, et al. Occurrence of antibiotic resistance gene cassettes. Society. 2002;46(9):2948–55.

CAS  Google Scholar 

Naha A, Pazhani GP, Ganguly M, Ghosh S, Ramamurthy T, Nandy RK, et al. Development and evaluation of a PCR assay for tracking the emergence and dissemination of haitian variant ctxB in Vibrio cholerae O1 strains isolated from Kolkata India. J Clin Microbiol. 2012;50(5):1733–6.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dallenne C, Da Costa A, Decré D, Favier C, Arlet G. Development of a set of multiplex PCR assays for the detection of genes encoding important b-lactamases in enterobacteriaceae. J Antimicrob Chemother. 2010;65(3):490–5.

Article  CAS  PubMed  Google Scholar 

Daoud Z, Sokhn SE, Salem Sokhn E, Masri K, Cheaito K, Haidar-Ahmad N, et al. Escherichia coli isolated from urinary tract infections of lebanese patients between 2005 and 2012: epidemiology and profiles of resistance. Front Med. 2015. https://doi.org/10.3389/fmed.2015.00066.

Article  Google Scholar 

Bin Kim H, Wang M, Ahmed S, Park CH, LaRocque RC, Faruque ASG, et al. Transferable quinolone resistance in Vibrio cholerae. Antimicrob Agents Chemother. 2010;54(2):799–803.

Article  Google Scholar 

Bin Kim H, Park CH, Kim CJ, Kim E, Jacoby GA, Hooper DC. Prevalence of plasmid-mediated quinolone resistance determinants over a 9-year period. Antimicrob Agents Chemother. 2009;53(2):639–45.

Article  Google Scholar 

Mulvey MR, Grant JM, Plewes K, Roscoe D, Boyd DA. New Delhi metallo-β-lactamase in klebsiella pneumoniae and Escherichia coli Canada. Emerg Infect Dis. 2011;17(1):103–6.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Monir MM, Islam MT, Mazumder R, Mondal D, Nahar KSSM, et al. Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh Res Sq. Basel: Preprint; 2022.

Google Scholar 

Page AJ, Taylor B, Keane JA. Multilocus sequence typing by blast from de novo assemblies against PubMLST. J Open Source Softw. 2016;1(8):118.

Article  Google Scholar 

Ambroise J, Irenge LM, Durant JF, Bearzatto B, Bwire G, Colin Stine O, et al. Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae. PLoS ONE. 2019;14(12):1–12.

Article  Google Scholar 

Wu CJ, Chuang YC, Lee MF, Lee CC, Lee HC, Lee NY, et al. Bacteremia due to extended-spectrum-β-lactamase-producing Aeromonas spp. at a medical center in Southern Taiwan. Antimicrob Agents Chemother. 2011;55(12):5813–8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guo X, Xia R, Han N, Xu H. Genetic diversity analyses of class 1 integrons and their associated antimicrobial resistance genes in enterobacteriaceae strains recovered from aquatic habitats in China. Lett Appl Microbiol. 2011. https://doi.org/10.1111/j.1472-765X.2011.03059.x.

Article  PubMed  Google Scholar 

Wen Y, Pu X, Zheng W, Hu G. High prevalence of plasmid-mediated quinolone resistance and incq plasmids carrying qnrs2 gene in bacteria from rivers near hospitals and aquaculture in China. PLoS ONE. 2016. https://doi.org/10.1371/journal.pone.0159418.

Article  PubMed  PubMed Central  Google Scholar 

Nair GB, Qadri F, Holmgren J, Svennerholm AM, Safa A, Bhuiyan NA, et al. Cholera due to altered El Tor strains of Vibrio cholerae O1 in Bangladesh. J Clin Microbiol. 2006;44(11):4211–3.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pal BB, Nayak AK, Nayak SR. Emergence and spread of different ctxB alleles of Vibrio cholerae O1 in Odisha. India Int J Infect Dis. 2021;1(105):730–2.

Article  Google Scholar 

Satchell KJF, Jones CJ, Wong J, Queen J, Agarwal S, Yildiz FH. Phenotypic analysis reveals that the 2010 haiti cholera epidemic is linked to a hypervirulent strain. Infect Immun. 2016;84(9):2473–81.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hossain ZZ, Leekitcharoenphon P, Dalsgaard A, Sultana R, Begum A, Jensen PKM, et al. Comparative genomics of Vibrio cholerae O1 isolated from cholera patients in Bangladesh. Lett Appl Microbiol. 2018;67(4):329–36.

Article  CAS  PubMed  Google Scholar 

Ramamurthy T, Mutreja A, Weill FX, Das B, Ghosh A, Nair GB. Revisiting the global epidemiology of cholera in conjuction with the genomics of Vibrio cholerae. Front Public Heal. 2019;7(July):1–10.

Google Scholar 

Smith AM, Weill FX, Njamkepo E, Ngomane HM, Ramalwa N, Sekwadi P, et al. Emergence of Vibrio cholerae o1 sequence type 75, South Africa, 2018–2020. Emerg Infect Dis. 2021;27(11):2927–31.

Article  CAS  PubMed  PubMed Central  Google Scholar 

George CM, Rashid M, Almeida M, Monira S, Bhuyian SI, Hasan K, et al. Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh. BMC Genomics. 2017. https://doi.org/10.1186/s12864-017-4254-9.

Article  PubMed  PubMed Central  Google Scholar 

Monir MM, Hossain T, Morita M, Ohnishi M, Johura F-T, Sultana M, et al. Genomic characteristics of recently recognized Vibrio cholerae El Tor lineages associated with cholera in Bangladesh, 1991 to 2017. Microbiol Spectr. 2022. https://doi.org/10.1128/spectrum.00391-22.

Article  PubMed  PubMed Central  Google Scholar 

Alam M, Kasan NA, Sadique A, Bhuiyan NA, Ahmed KU, Nusrin S, et al. Seasonal cholera caused by Vibrio cholerae serogroups O1 and O139 in the coastal aquatic environment of Bangladesh. Appl Environ Microbiol. 2006;72(6):4096–104.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alam M, Sultana M, Nair GB, Sack RB, Sack DA, Siddique AK, et al. Toxigenic Vibrio cholerae in the aquatic environment of mathbaria Bangladesh. Appl Environ Microbiol. 2006;72(4):2849–55.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yuan X, Li Y, Vaziri AZ, Kaviar VH, Jin Y, Jin Y, et al. Global status of antimicrobial resistance among environmental isolates of Vibrio cholerae O1/O139: a systematic review and meta-analysis. Antimicrob Resist Infect Control. 202