Forster P, T. Storelvmo, K. Armour, W. Collins, J.-L. Dufresne, D. Frame, D.J. Lunt, T. Mauritsen, M.D. Palmer, M. Watanabe, M. Wild, and H. Zhang. The Earth’s energy budget, climate feedbacks, and climate sensitivity. Climate Change 2021: The Physical Science Basis Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change. 2021: [Masson-Delmotte, V., P. Zhai, A. Pirani, S.L. Connors, C. Péan, S. Berger, N. Caud, Y. Chen, L. Goldfarb, M.I. Gomis, M. Huang, K. Leitzell, E. Lonnoy, J.B.R. Matthews, T.K. Maycock, T. Waterfield, O. Yelekçi, R. Yu, and B. Zhou (eds.)]. Cambridge University Press. In Press.
IPCC. Climate Change 2021: The Physical Science Basis Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change. 2021:[Masson-Delmotte, V., P. Zhai, A. Pirani, S. L. Connors, C. Péan, S. Berger, N. Caud, Y. Chen, L. Goldfarb, M. I. Gomis, M. Huang, K. Leitzell, E. Lonnoy, J.B.R. Matthews, T. K. Maycock, T. Waterfield, O. Yelekçi, R. Yu and B. Zhou (eds.)]. Cambridge University Press. In Press.
Saunois M, Bousquet P, Poulter B, Peregon A, Ciais P, Canadell JG, et al. The global methane budget 2000–2012. Earth Syst Sci Data. 2016;8(2):697–751.
Dangal SRS, Tian H, Zhang B, Pan S, Lu C, Yang J. Methane emission from global livestock sector during 1890–2014: magnitude, trends and spatiotemporal patterns. Glob Chang Biol. 2017;23(10):4147–61.
Wolf J, Asrar GR, West TO. Revised methane emissions factors and spatially distributed annual carbon fluxes for global livestock. Carbon Balance Manag. 2017;12(1):16.
Article PubMed PubMed Central Google Scholar
St-Pierre B, Wright AD. Diversity of gut methanogens in herbivorous animals. Animal. 2013;7(Suppl 1):49–56.
Von Engelhardt W, Wolter S, Lawrenz H, Hemsley J. Production of methane in two non-ruminant herbivores. Comp Biochem Physiol A Physiol. 1978;60(3):309–11.
Vendl C, Clauss M, Stewart M, Leggett K, Hummel J, Kreuzer M, et al. Decreasing methane yield with increasing food intake keeps daily methane emissions constant in two foregut fermenting marsupials, the western grey kangaroo and red kangaroo. J Exp Biol. 2015;218(21):3425–34.
Ouwerkerk D, Maguire A, McMillen L, Klieve A. Hydrogen utilising bacteria from the forestomach of eastern grey (Macropus giganteus) and red (Macropus rufus) kangaroos. Anim Prod Sci. 2009;49(11):1043–51.
Klieve AV, Ouwerkerk D, Maguire AJ. Archaea in the foregut of macropod marsupials: PCR and amplicon sequence-based observations. J Appl Microbiol. 2012;113(5):1065–75.
Article CAS PubMed Google Scholar
Evans PN, Hinds LA, Sly LI, McSweeney CS, Morrison M, Wright A-DG. Community composition and density of methanogens in the foregut of the tammar wallaby (Macropus eugenii). Appl Environ Microbiol. 2009;75(8):2598.
Article CAS PubMed PubMed Central Google Scholar
Hoedt EC, Cuív PÓ, Evans PN, Smith WJM, McSweeney CS, Denman SE, et al. Differences down-under: alcohol-fueled methanogenesis by archaea present in Australian macropodids. ISME J. 2016;10(10):2376–88.
Article CAS PubMed PubMed Central Google Scholar
Hoedt EC, Parks DH, Volmer JG, Rosewarne CP, Denman SE, McSweeney CS, et al. Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size. ISME J. 2018;12(12):2942–53.
Article PubMed PubMed Central Google Scholar
Shiffman M, Soo R, Dennis P, Morrison M, Tyson G, Hugenholtz P. Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion. PeerJ. 2017;5:e4075-e.
Thomas CM, Desmond-Le Quéméner E, Gribaldo S, Borrel G. Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom. Nat Commun. 2022;13(1):3358.
Article CAS PubMed PubMed Central Google Scholar
Miller TL, Lin C. Description of Methanobrevibacter gottschalkii sp. nov., Methanobrevibacter thaueri sp. nov., Methanobrevibacter woesei sp. nov. and Methanobrevibacter wolinii sp. nov. Int J Syst Evol Microbiol. 2002;52(Pt 3):819–22.
Zhao Y, Boone DR, Mah RA, Boone JE, Xun L. Isolation and characterization of Methanocorpusculum labreanum sp. nov. from the LaBrea Tar Pits. Int J Syst Evol Microbiol. 1989;39(1):10–3.
Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, Glavina Del Rio T, et al. Complete genome sequence of Methanocorpusculum labreanum type strain Z. Stand Genomic Sci. 2009;1(2):197–203.
Article PubMed PubMed Central Google Scholar
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–9.
Article CAS PubMed PubMed Central Google Scholar
Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A. 2009;106(45):19126–31.
Article CAS PubMed PubMed Central Google Scholar
Zellner G, Stackebrandt E, Messner P, Tindall BJ, de Conway ME, Kneifel H, et al. Methanocorpusculaceae fam. nov., represented by Methanocorpusculum parvum, Methanocorpusculum sinense spec. nov. and Methanocorpusculum bavaricum spec. nov. Arch Microbiol. 1989;151(5):381–90.
Article CAS PubMed Google Scholar
Fernandes KA, Kittelmann S, Rogers CW, Gee EK, Bolwell CF, Bermingham EN, et al. Faecal microbiota of forage-fed horses in New Zealand and the population dynamics of microbial communities following dietary change. PLoS One. 2014;9(11):e112846.
Article PubMed PubMed Central Google Scholar
Graham DE, White RH. Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomics. Nat Prod Rep. 2002;19(2):133–47.
Article CAS PubMed Google Scholar
Cheeseman P, Toms-Wood A, Wolfe RS. Isolation and properties of a fluorescent compound, factor 420, from Methanobacterium strain M.o.H. J Bacteriol. 1972;112(1):527–31.
Article CAS PubMed PubMed Central Google Scholar
Nayfach S, Shi ZJ, Seshadri R, Pollard KS, Kyrpides NC. New insights from uncultivated genomes of the global human gut microbiome. Nature. 2019;568(7753):505–10.
Article CAS PubMed PubMed Central Google Scholar
Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, et al. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nat Microbiol. 2017;2(11):1533–42.
Article CAS PubMed Google Scholar
Xie F, Jin W, Si H, Yuan Y, Tao Y, Liu J, et al. An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants. Microbiome. 2021;9(1):137.
Article CAS PubMed PubMed Central Google Scholar
Gilroy R, Ravi A, Getino M, Pursley I, Horton DL, Alikhan NF, et al. Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ. 2021;9:e10941.
Article PubMed PubMed Central Google Scholar
Chaumeil P-A, Mussig AJ, Hugenholtz P, Parks DH. GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database. Bioinformatics. 2019;36(6):1925–7.
PubMed PubMed Central Google Scholar
Price MN, Dehal PS, Arkin AP. FastTree 2 – approximately maximum-likelihood trees for large alignments. PLoS One. 2010;5(3):e9490.
Article PubMed PubMed Central Google Scholar
Chaudhari NM, Gupta VK, Dutta C. BPGA- an ultra-fast pan-genome analysis pipeline. Sci Rep. 2016;6(1):24373.
Article CAS PubMed PubMed Central Google Scholar
Gilmore SP, Henske JK, Sexton JA, Solomon KV, Seppala S, Yoo JI, et al. Genomic analysis of methanogenic archaea reveals a shift towards energy conservation. BMC Genomics. 2017;18(1):639.
Article PubMed PubMed Central Google Scholar
Médici R, Stammes H, Kwakernaak S, Otten LG, Hanefeld U. Assessing the stereoselectivity of Serratia marcescens CECT 977 2,3-butanediol dehydrogenase. Catalysis Sci Technol. 2017;7(9):1831–7.
Kotani T, Yamamoto T, Yurimoto H, Sakai Y, Kato N. Propane monooxygenase and NAD+-dependent secondary alcohol dehydrogenase in propane metabolism by Gordonia sp. Strain TY-5. J Bacteriol. 2003;185(24):7120–8.
Article CAS PubMed PubMed Central Google Scholar
Schweiger G, Dutscho R, Buckel W. Purification of 2-hydroxyglutaryl-CoA dehydratase from Acidaminococcus fermentans. An iron-sulfur protein. Eur J Biochem. 1987;169(2):441–8.
Article CAS PubMed Google Scholar
Porter AW, Young LY. Chapter five - Benzoyl-CoA, a universal biomarker for anaerobic degradation of aromatic compounds. In: Sariaslani S, Gadd GM, editors. Advances in Applied Microbiology. 88: Academic Press; 2014. p. 167–203.
Najmudin S, Guerreiro CIPD, Carvalho AL, Prates JAM, Correia MAS, Alves VD, et al. Xyloglucan is recognized by carbohydrate-binding modules that interact with β-glucan chains*. J Biol Chem. 2006;281(13):8815–28.
Article CAS PubMed Google Scholar
Zellner G, Alten C, Stackebrandt E, de Conway ME, Winter J. Isolation and characterization of Methanocorpusculum parvum, gen. nov., spec. nov., a new tungsten requiring, coccoid methanogen. Arch Microbiol. 1987;147(1):13–20.
Hong P-Y, Wheeler E, Cann IKO, Mackie RI. Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing. ISME J. 2011;5(9):1461–70.
留言 (0)