Agostini F, Zanzoni A, Klus P, Marchese D, Cirillo D, Tartaglia GG (2013) catRAPID omics: a web server for large-scale prediction of protein-RNA interactions. Bioinformatics 29:2928–2930. https://doi.org/10.1093/bioinformatics/btt495

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alaseem A, Alhazzani K, Dondapati P, Alobid S, Bishayee A, Rathinavelu A (2019) Matrix Metalloproteinases: a challenging paradigm of cancer management. Semin Cancer Biol 56:100–115. https://doi.org/10.1016/j.semcancer.2017.11.008

Article  CAS  PubMed  Google Scholar 

Andersen RE, Hong SJ, Lim JJ, Cui M, Harpur BA, Hwang E, Delgado RN, Ramos AD, Liu SJ, Blencowe BJ, Lim DA (2019) The long noncoding RNA Pnky is a trans-acting regulator of cortical development in vivo. Dev Cell 49:632-642.e7. https://doi.org/10.1016/j.devcel.2019.04.032

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bian EB, Chen EF, Xu YD, Yang ZH, Tang F, Ma CC, Wang HL, Zhao B (2019) Exosomal lncRNA-ATB activates astrocytes that promote glioma cell invasion. Int J Oncol 54:713–721. https://doi.org/10.3892/ijo.2018.4644

Article  CAS  PubMed  Google Scholar 

Biscarini S, Capauto D, Peruzzi G, Lu L, Colantoni A, Santini T, Shneider NA, Caffarelli E, Laneve P, Bozzoni I (2018) Characterization of the lncRNA transcriptome in mESC-derived motor neurons: Implications for FUS-ALS. Stem Cell Res 27:172–179. https://doi.org/10.1016/j.scr.2018.01.037

Article  CAS  PubMed  Google Scholar 

Borden KLB (2020) The nuclear pore complex and mRNA export in cancer. Cancers (basel) 13:42. https://doi.org/10.3390/cancers13010042

Article  CAS  PubMed  Google Scholar 

Bridges MC, Daulagala AC, Kourtidis A (2021) LNCcation: lncRNA localization and function. J Cell Biol 220:e202009045. https://doi.org/10.1083/jcb.202009045

Article  CAS  PubMed  PubMed Central  Google Scholar 

Carruale A, Muntone G, Rojas R, Bonfigli S, Virdis P, Longu F, Valdes G, Piras G, Uras A, Palmas A, Caocci G, La Nasa G, Fozza C (2019) Acute basophilic leukemia with U2AF1 mutation. Blood Cells Mol Dis 76:63–65. https://doi.org/10.1016/j.bcmd.2019.02.002

Article  CAS  PubMed  Google Scholar 

Chang CT, Hautbergue GM, Walsh MJ, Viphakone N, van Dijk TB, Philipsen S, Wilson SA (2013) Chtop is a component of the dynamic TREX mRNA export complex. EMBO J 32:473–486. https://doi.org/10.1038/emboj.2012.342

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen LL (2016) Linking long noncoding RNA localization and function. Trends Biochem Sci 41:761–772. https://doi.org/10.1016/j.tibs.2016.07.003

Article  CAS  PubMed  Google Scholar 

Chen ZH, Chen TQ, Zeng ZC, Wang D, Han C, Sun YM, Huang W, Sun LY, Fang K, Chen YQ, Luo XQ, Wang WT (2020) Nuclear export of chimeric mRNAs depends on a lncRNA-triggered autoregulatory loop in blood malignancies. Cell Death Dis 11:566. https://doi.org/10.1038/s41419-020-02795-1

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chi Y, Wang D, Wang J, Yu W, Yang J (2019) Long non-coding RNA in the pathogenesis of cancers. Cells 8:1015. https://doi.org/10.3390/cells8091015

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cho KO, Hsieh J (2015) The lncRNA Pnky in the brain. Cell Stem Cell 16:344–345. https://doi.org/10.1016/j.stem.2015.03.015

Article  CAS  PubMed  Google Scholar 

Constanty F, Shkumatava A (2021) lncRNAs in development and differentiation: from sequence motifs to functional characterization. Development 148:dev182741. https://doi.org/10.1242/dev.182741

Article  CAS  PubMed  Google Scholar 

Cui C, Wang P, Cui N, Song S, Liang H, Ji A (2016) Stichopus japonicus polysaccharide, Hucoidan, or Heparin enhanced the SDF-1α/CXCR4 Axis and promoted NSC Migration via activation of the PI3K/Akt/FOXO3a signaling pathway. Cell Mol Neurobiol 36:1311–1329. https://doi.org/10.1007/s10571-016-0329-4

Article  CAS  PubMed  Google Scholar 

Cui Y, Yin Y, Xiao Z, Zhao Y, Chen B, Yang B, Xu B, Song H, Zou Y, Ma X, Dai J (2019) LncRNA Neat1 mediates miR-124-induced activation of Wnt/β-catenin signaling in spinal cord neural progenitor cells. Stem Cell Res Ther 10:400. https://doi.org/10.1186/s13287-019-1487-3

Article  CAS  PubMed  PubMed Central  Google Scholar 

De Gioia R, Biella F, Citterio G, Rizzo F, Abati E, Nizzardo M, Bresolin N, Comi GP, Corti S (2020) Neural stem cell transplantation for neurodegenerative diseases. Int J Mol Sci 21:3103. https://doi.org/10.3390/ijms21093103

Article  CAS  PubMed  PubMed Central  Google Scholar 

Engert J, Rak K, Bieniussa L, Scholl M, Hagen R, Voelker J (2021) Evaluation of the neurogenic potential in the rat inferior colliculus from early postnatal days until adulthood. Mol Neurobiol 58:719–734. https://doi.org/10.1007/s12035-020-02151-6

Article  CAS  PubMed  Google Scholar 

Esfahani MS, Lee LJ, Jeon YJ, Flynn RA, Stehr H, Hui AB, Ishisoko N, Kildebeck E, Newman AM, Bratman SV, Porteus MH, Chang HY, Alizadeh AA, Diehn M (2019) Functional significance of U2AF1 S34F mutations in lung adenocarcinomas. Nat Commun 10:5712. https://doi.org/10.1038/s41467-019-13392-y

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fan B, Pan W, Wang X, Wei M, He A, Zhao A, Chopp M, Zhang ZG, Liu XS (2020) Long noncoding RNA mediates stroke-induced neurogenesis. Stem Cells 38:973–985. https://doi.org/10.1002/stem.3189

Article  CAS  PubMed  Google Scholar 

Fila M, Diaz L, Szczepanska J, Pawlowska E, Blasiak J (2021) mRNA trafficking in the nervous system: a key mechanism of the involvement of activity-regulated cytoskeleton-associated protein (arc) in synaptic plasticity. Neural Plast 2021:3468795. https://doi.org/10.1155/2021/3468795

Article  CAS  PubMed  PubMed Central  Google Scholar 

Grammatikakis I, Gorospe M (2016) Identification of neural stem cell differentiation repressor complex Pnky-PTBP1. Stem Cell Investig 3:10. https://doi.org/10.21037/sci.2016.03.05

Article  CAS  PubMed  PubMed Central  Google Scholar 

Han Y, Zhou L, Wu T, Huang Y, Cheng Z, Li X, Sun T, Zhou Y, Du Z (2016) Downregulation of lncRNA-MALAT1 affects proliferation and the expression of stemness markers in glioma stem cell line SHG139S. Cell Mol Neurobiol 36:1097–1107. https://doi.org/10.1007/s10571-015-0303-6

Article  CAS  PubMed  Google Scholar 

He TS, Xie T, Li J, Yang YX, Li C, Wang W, Cao L, Rao H, Ju C, Xu LG (2019) THO complex subunit 7 homolog negatively regulates cellular antiviral response against RNA viruses by targeting TBK1. Viruses 11:158. https://doi.org/10.3390/v11020158

Article  CAS  PubMed  PubMed Central  Google Scholar 

Heath CG, Viphakone N, Wilson SA (2016) The role of TREX in gene expression and disease. Biochem J 473:2911–2935. https://doi.org/10.1042/BCJ20160010

Article  CAS  PubMed  Google Scholar 

Hirata E, Kiyokawa E (2019) ERK activity imaging during migration of living cells in vitro and in vivo. Int J Mol Sci 20:679. https://doi.org/10.3390/ijms20030679

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huang L, Peng F, Wei Y, He W, Zhao S, Wang J, Zhang Y, Zhao H, Deng W (2019) A novel method to investigate the effects of gene mutations at the cellular level using a dual expression lentiviral vector. Biosci Rep 39:BSR20182383. https://doi.org/10.1042/BSR20182383

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kang GJ, Park MK, Byun HJ, Kim HJ, Kim EJ, Yu L, Kim B, Shim JG, Lee H, Lee CH (2020) SARNP, a participant in mRNA splicing and export, negatively regulates E-cadherin expression via interaction with pinin. J Cell Physiol 235:1543–1555. https://doi.org/10.1002/jcp.29073

Article  CAS  PubMed  Google Scholar 

Katahira J (2012) mRNA export and the TREX complex. Biochim Biophys Acta 1819:507–513. https://doi.org/10.1016/j.bbagrm.2011.12.001

Article  CAS  PubMed  Google Scholar 

Khan M, Hou S, Azam S, Lei H (2021) Sequence-dependent recruitment of SRSF1 and SRSF7 to intronless lncRNA NKILA promotes nuclear export via the TREX/TAP pathway. Nucleic Acids Res 49:6420–6436. https://doi.org/10.1093/nar/gkab445

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kim D, Paggi JM, Park C, Bennett C, Salzberg SL (2019) Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37:907–915. https://doi.org/10.1038/s41587-019-0201-4

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kim H, Lee S, Chang JW, Ar K, Jang H, Na DL (2021) Intraspinal cavity injection of human mesenchymal stem cells and tracking their migration into the rat brain. J vis Exp 168:e62120. https://doi.org/10.3791/62120

Article  CAS  Google Scholar 

Kopp F (2019) Molecular functions and biological roles of long non-coding RNAs in human physiology and disease. J Gene Med 21:e3104. https://doi.org/10.1002/jgm.3104

Article  PubMed