Rainey FA, WardRainey N, Kroppenstedt RM, Stackebrandt E. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Evol Microbiol. 1996;46:1088–92.

CAS  Google Scholar 

Goodfellow M, Order XV Streptosporangiales ord. nov. In: Goodfellow M, Kämpfer P, Busse HJ, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (eds), Bergey’s Manual of Systematic Bacteriology vol. 5, 2nd edn., Springer, New York, 2012, p. 1805.

Meyer J. Nocardiopsis, a new genus of the order Actinomycetales. Int J Sys Bacteriol. 1976;26:487–93.

Article  Google Scholar 

Chen YG, Cui XL, Kroppenstedt RM, Stackebrandt E, Wen ML, et al. Nocardiopsis quinghaiensis sp. nov. isolated from saline soil in China. Int J Syst Evol Microbiol. 2008;58:699–705.

Article  CAS  Google Scholar 

Chen YG, Zhang YQ, Tang SK, Liu ZX, Xu LH, et al. Nocardiopsis terrae sp. nov., a halophilic actinomycete isolated from saline soil. Antonie van Leeuwenhoek. 2010;98:31–8.

Article  Google Scholar 

Pan HQ, Zhang DF, Li L, Jiang Z, Li WJ. Nocardiopsis oceani sp. nov. and nocardiopsis nanhaiensis sp. nov. actinomycetes isolated from marine sediment of the south china sea. Int J Syst Evol Microbiol. 2015;65:3384–91.

Article  CAS  Google Scholar 

Akhwale JK, Göker M, Rohde M, Schumann P, Boga HI, et al. Nocardiopsis mwathae sp. nov., isolated from the haloalkaline Lake Elmenteita in the African Rift Valley. Antonie van Leeuwenhoek. 2016;109:421–30.

Article  CAS  Google Scholar 

Schippers A. Nocardiopsis metallicus sp. nov. a metal-leaching actinomycete isolated from an alkaline slag dump. Int J Syst Evol Microbiol. 2002;52:2291–5.

CAS  Google Scholar 

Devi AM, Nimaichand S, Hamidah I, Xiao-Tong Z, Bull AT, et al. Nocardiopsis deserti sp. nov. isolated from a high altitude atacama desert soil. Int J Syst Evol Microbiol. 2020;70:3210–8.

Article  Google Scholar 

Hamedi J, Mohammadipanah F, Von JM, Potter G, Schumann P, et al. Nocardiopsis sinuspersici sp. nov. isolated from sandy rhizospheric soil. Int J Syst Evol Microbiol. 2010;60:2346–52.

Article  CAS  Google Scholar 

Zhang YG, Lu XH, Ding YB, Zhou XK, Wan HF, et al. Nocardiopsis rhizosphaerae sp. nov., isolated from rhizosphere soil of Halocnermum strobilaceum (Pall.) Bieb. Int J Syst Evol Microbiol. 2016;66:5129–33.

Article  CAS  Google Scholar 

Muangham S, Suksaard P, Mingma R, Matsumoto A, Takahashi Y, et al. Nocardiopsis sediminis sp. nov., isolated from mangrove sediment Free. Int J Syst Evol Microbiol. 2016;66:3835–40.

Article  CAS  Google Scholar 

Qin S, Li J, Chen HH, Zhao GZ, Zhu WY, et al. Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl Environ Microbiol. 2009;75:6176–86.

Article  CAS  Google Scholar 

Sindhuphak W, Macdonald E. Head actinomycetoma caused by Nocardiopsis dassonvillei. Arch. Dermatol. 1985;121:1332–4.

Article  CAS  Google Scholar 

Mordarska H, Zakrzewska-Czerwiñska J, Paściak M, Szponar B, Rowiñski S. Rare, suppurative pulmonary infection caused by Nocardiopsis dassonvillei recognized by glycolipid markers. FEMS Immunol Med Microbiol. 1998;21:47–55.

Article  CAS  Google Scholar 

Bennur T, Kumar AR, Zinjarde SS, Javdekar V. Nocardiopsis species: a potential source of bioactive compounds. J Appl Microbiol. 2016;120:1–16.

Article  CAS  Google Scholar 

Mo P, Yu YZ, Zhao JR, Gao J. Streptomyces xiangtanensis sp. nov., isolated from a manganese-contaminated soil. Antonie van Leeuwenhoek. 2017;110:297–304.

Article  CAS  Google Scholar 

Atlas RM In: Parks LC (ed) Handbook of microbiological media. CRC Press, Boca Raton, 1993;pp: 666–72.

Shirling EB, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol. 1966;16:313–40.

Article  Google Scholar 

Ridgway R Color standards and color nomenclature. Ridgway, Washington, DC, 1912;pp: 1–43.

Ruan JS, Huang Y Rapid identification and systematics of Actinobacteria. Science Press, Beijing, China, 2011;pp: 72–7.

Xu LH, Li WJ, Liu ZH, Jiang CL Actinomycetes systematics: principles, methods and practices. Science Press, Beijing, China. 2007;pp: 40–53.

MIDI. Sherlock Microbial Identification System Operating Manual, Version 6.0. Newark DE: MIDI Inc. 2005;pp: 1–7.

Hasegawa T, Takizawa M, Tanida S. A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol. 1983;29:319–22.

Article  CAS  Google Scholar 

Lechevalier MP, Lechevalier H. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol. 1970;20:435–43.

Article  CAS  Google Scholar 

Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol. 1977;100:221–30.

Article  CAS  Google Scholar 

Kroppenstedt RM Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, England, pp, 1985: 173–99.

Kates M Techniques of Lipidology, 2nd ed. Amsterdam: Elsevier, 1986.

Komagata K, Suzuki KI. 4 lipid and cell-wall analysis in bacterial systematics. Method Microbiol. 1988;19:161–207.

Article  Google Scholar 

Lane, DJ 16S/23S rRNA sequencing. In: nucleic acid techniques in bacterial systematics. Stackebrandt E, Goodfellow M, eds., John Wiley and Sons, New York, NY, pp, 1991: 115–75.

Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol. 2017;67:1613–7.

Article  CAS  Google Scholar 

Saitou N, Nei M. The Neighbor-joining Method: A New Method for Reconstructing Phylogenetic Trees. Mol Biol Evol. 1987;4:406–25.

CAS  Google Scholar 

Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17:368–76.

Article  CAS  Google Scholar 

Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol. 1971;20:406–16.

Article  Google Scholar 

Kumar S, Stecher G, Tamura K. MEGA 7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–4.

Article  CAS  Google Scholar 

Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783–91.

Article  Google Scholar 

Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, et al. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep. 2015;5:8365.

Article  Google Scholar 

Overbeek R, Olson R, Pusch GD, Olsen GJ, Stevens R, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2014;42:D206–214.

Article  CAS  Google Scholar 

Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat. Commun. 2019;10:2182.

Article  Google Scholar 

Richter M, Rosselló-Móra R, Ckner FOG, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics. 2015;32:929–31.

Article  Google Scholar 

Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform. 2013;14:1–14.

Article  Google Scholar 

Rodriguez RL, Gunturu S, Harvey WT, Rossello-Mora R, Tiedje JM, et al. The Microbial Genomes Atlas (MiGA) webserver: taxonomicand gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Res. 2018;46:W282–W288.

Article  Google Scholar 

Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O. International committee on systematic bacteriology. report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol. 1987;37:463–4.

Article  Google Scholar 

Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Nat Acad Sci USA. 2009;106:19126–31.

Article  CAS  Google Scholar 

Vincent L, Richard D, Olivier G. FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol. 2015;32:2798–800.

Article  Google Scholar 

Farris JS. Estimating phylogenetictrees from distance matrices. Am Nat. 1972;106:645–68.

Article  Google Scholar 

Fang CY, Zhang JL, Pang HC, Li YY, Xin YH, et al. Nocardiopsis flavescens sp. nov., an actinomycete isolated from marine sediment. Int J Syst Evol Microbiol. 2011;61:2640–5.

Article  CAS  Google Scholar