Abe K, Nomura N, Suzuki S (2020) Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism. FEMS Microbiol Ecol 96(5):031. https://doi.org/10.1093/femsec/fiaa031
Affandi T, McEvoy MM (2019) Mechanism of metal ion-induced activation of a two-component sensor kinase. Biochem J 476:115–135. https://doi.org/10.1042/bcj20180577
Alav I, Kobylka J, Kuth MS, Pos KM, Picard M, Blair JMA, Bavro VN (2021) Structure, assembly, and function of tripartite efflux and type 1 secretion systems in gram-negative bacteria. Chem Rev 121(9):5479–5596. https://doi.org/10.1021/acs.chemrev.1c00055
Almarcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA (2014a) New copper resistance determinants in the extremophile acidithiobacillus ferrooxidans: a quantitative proteomic analysis. J Proteome Res 13(2):946–960. https://doi.org/10.1021/pr4009833
Almarcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA (2014b) Response to copper of Acidithiobacillus ferrooxidans ATCC 23270 grown in elemental sulfur. Res Microbiol 165(9):761–772. https://doi.org/10.1016/j.resmic.2014.07.005
Andrei A, Ozturk Y, Khalfaoui-Hassani B, Rauch J, Marckmann D, Trasnea PI, Daldal F, Koch HG (2020) Cu homeostasis in bacteria: the ins and outs. Membranes (Basel) 10(9):242. https://doi.org/10.3390/membranes10090242
Baker-Austin C, Dopson M, Wexler M, Sawers RG, Bond PL (2005) Molecular insight into extreme copper resistance in the extremophilic archaeon “Ferroplasma acidarmanus” Fer1. Microbiology 151:2637–2646. https://doi.org/10.1099/mic.0.28076-0
Baksh KA, Zamble DB (2020) Allosteric control of metal-responsive transcriptional regulators in bacteria. J Biol Chem 295(6):1673–1684. https://doi.org/10.1074/jbc.REV119.011444
Banerjee P, Jain D (2019) Sensor I regulated ATPase activity of FleQ is essential for motility to biofilm transition in Pseudomonas aeruginosa. ACS Chem Biol 14(7):1515–1527. https://doi.org/10.1021/acschembio.9b00255
Banerjee P, Sahoo PK, AdhikaryRuhalJain ARD (2021) Molecular and structural facets of c-di-GMP signalling associated with biofilm formation in Pseudomonas aeruginosa. Mol Asp Med. https://doi.org/10.1016/j.mam.2021.101001
Barahona S, Castro-Severyn J, Dorador C, Saavedra C, Remonsellez F (2020) Determinants of copper resistance in acidithiobacillus ferrivorans ACH Isolated from the Chilean altiplano. Genes 11(8):844
Baraquet C, Murakami K, Parsek MR, Harwood CS (2012) The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP. Nucleic Acids Res 40(15):7207–7218. https://doi.org/10.1093/nar/gks384
Benach J, Swaminathan SS, Tamayo R, Handelman SK, Folta-Stogniew E, Ramos JE, Forouhar F, Neely H, Seetharaman J, Camilli A, Hunt JF (2007) The structural basis of cyclic diguanylate signal transduction by PilZ domains. EMBO J 26(24):5153–5166. https://doi.org/10.1038/sj.emboj.7601918
Bhamidimarri SP, Young TR, Shanmugam M, Soderholm S, Baslé A, Bumann D, van den Berg B (2021) Acquisition of ionic copper by a bacterial outer membrane protein. bioRxiv. https://doi.org/10.1101/2020.06.04.134395
Boehm A, Kaiser M, Li H, Spangler C, Kasper CA, Ackermann M, Kaever V, Sourjik V, Roth V, Jenal U (2010) Second messenger-mediated adjustment of bacterial swimming velocity. Cell 141(1):107–116. https://doi.org/10.1016/j.cell.2010.01.018
Cárdenas JP, Moya F, Covarrubias P, Shmaryahu A, Levicán G, Holmes DS, Quatrini R (2012) Comparative genomics of the oxidative stress response in bioleaching microorganisms. Hydrometallurgy 127–128:162–167. https://doi.org/10.1016/j.hydromet.2012.07.014
Cardenas JP, Lazcano M, Ossandon FJ, Corbett M, Holmes DS, Watkin E (2014) Draft genome sequence of the iron-oxidizing acidophile Leptospirillum ferriphilum type strain DSM 14647. Genome Announc 2(6):e01153. https://doi.org/10.1128/genomeA.01153-14
Casino P, Rubio V, Marina A (2009) Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction. Cell 139(2):325–336. https://doi.org/10.1016/j.cell.2009.08.032
Castelle C, Guiral M, Malarte G, Ledgham F, Leroy G, Brugna M, Giudici-Orticoni MT (2008) A new iron-oxidizing/O-2-reducing supercomplex spanning both inner and outer membranes, isolated from the extreme acidophile Acidithiobacillus ferrooxidans. J Biol Chem 283(38):25803–25811. https://doi.org/10.1074/jbc.M802496200
Chacon KN, Mealman TD, McEvoy MM, Blackburn NJ (2014) Tracking metal ions through a Cu/Ag efflux pump assigns the functional roles of the periplasmic proteins. Proc Natl Acad Sci USA 111(43):15373–15378. https://doi.org/10.1073/pnas.1411475111
Chakravorty DK, Li P, Tran TT, Bayse CA, Merz KM Jr (2016) Metal ion capture mechanism of a copper metallochaperone. Biochemistry 55(3):501–509. https://doi.org/10.1021/acs.biochem.5b01217
Chandramohan A, Duprat E, Remusat L, Zirah S, Lombard C, Kish A (2018) Novel mechanism for surface layer shedding and regenerating in bacteria exposed to metal-contaminated conditions. Front Microbiol 9:3210. https://doi.org/10.3389/fmicb.2018.03210
Chen LX, Ren YL, Lin JQ, Liu XM, Pang X, Lin JQ (2012) Acidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutant. PLoS One 7(9):e39470. https://doi.org/10.1371/journal.pone.0039470
Chen XK, Li XY, Ha YF, Lin JQ, Liu XM, Pang X, Lin JQ, Chen LX (2020) Ferric uptake regulator provides a new strategy for acidophile adaptation to acidic ecosystems. Appl Environ Microbiol. https://doi.org/10.1128/aem.00268-20
Chen YY, Yin JJ, Wei J, Zhang XZ (2020) FurA-dependent microcystin synthesis under copper stress in Microcystis aeruginosa. Microorganisms 8(6):832. https://doi.org/10.3390/microorganisms8060832
Christel S, Herold M, Bellenberg S, El Hajjami M, Buetti-Dinh A, Pivkin IV, Sand W, Wilmes P, Poetsch A, Dopson M (2018) Multi-omics reveals the lifestyle of the Acidophilic, mineral-oxidizing model species Leptospirillum ferriphilum(T). Appl Environ Microbiol. https://doi.org/10.1128/AEM.02091-17
Christen M, Christen B, Allan MG, Folcher M, Jeno P, Grzesiek S, Jenal U (2007) DgrA is a member of a new family of cyclic diguanosine monophosphate receptors and controls flagellar motor function in Caulobacter crescentus. Proc Natl Acad Sci USA 104(10):4112–4117. https://doi.org/10.1073/pnas.0607738104
Colin R, Ni B, Laganenka L, Sourjik V (2021) Multiple functions of flagellar motility and chemotaxis in bacterial physiology. FEMS Microbiol Rev. https://doi.org/10.1093/femsre/fuab038
Das S (2022) Genetic regulation, biosynthesis and applications of extracellular polysaccharides of the biofilm matrix of bacteria. Carbohyd Polym. https://doi.org/10.1016/j.carbpol.2022.119536
Das A, Modak JM, Natarajan KA (1998) Surface chemical studies of Thiobacillus ferrooxidans with reference to copper tolerance. Antonie Van Leeuwenhoek Int J Gen Mol Microbiol 73(3):215–222. https://doi.org/10.1023/a:1000858525755
Denoncourt A, Downey M (2021) Model systems for studying polyphosphate biology: a focus on microorganisms. Curr Genet 67(3):331–346. https://doi.org/10.1007/s00294-020-01148-x
Diaz M, Castro M, Copaja S, Guiliani N (2018) Biofilm formation by the acidophile bacterium acidithiobacillus thiooxidans involves c-di-GMP pathway and Pel exopolysaccharide. Genes (Basel). https://doi.org/10.3390/genes9020113
Diaz M, San Martin D, Castro M, Vera M, Guiliani N (2021) Quorum sensing signaling molecules positively regulate c-di-GMP effector PelD encoding gene and PEL exopolysaccharide biosynthesis in extremophile bacterium acidithiobacillus thiooxidans. Genes 12(1):69. https://doi.org/10.3390/genes12010069
Dopson M, Baker-Austin C, Koppineedi PR, Bond PL (2003) Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms. Microbiology 149:1959–1970. https://doi.org/10.1099/mic.0.26296-0
Dunbar WS (2017) Biotechnology and the mine of tomorrow. Trends Biotechnol 35(1):79–89. https://doi.org/10.1016/j.tibtech.2016.07.004
Dwarakanath S, Chaplin AK, Hough MA, Rigali S, Vijgenboom E, Worrall JAR (2012) Response to copper stress in Streptomyces lividans extends beyond genes under direct control of a copper-sensitive operon repressor protein (CsoR). J Biol Chem 287(21):17833–17847. https://doi.org/10.1074/jbc.M112.352740
Esparza M, Jedlicki E, Gonzalez C, Dopson M, Holmes DS (2019) Effect of CO2 concentration on uptake and assimilation of inorganic carbon in the extreme acidophile Acidithiobacillus ferrooxidans. Front Microbiol 10:603. https://doi.org/10.3389/fmicb.2019.00603
Farias R, Norambuena J, Ferrer A, Camejo P, Zapata C, Chavez R, Orellana O, Levican G (2021) Redox stress response and UV tolerance in the acidophilic iron-oxidizing bacteria Leptospirillum ferriphilum and Acidithiobacillus ferrooxidans. Res Microbiol 172(3):103833. https://doi.org/10.1016/j.resmic.2021.103833
Feng S, Yang H, Wang W (2015) Microbial community succession mechanism coupling with adaptive evolution of adsorption performance in chalcopyrite bioleaching. Bioresour Technol 191:37–44. https://doi.org/10.1016/j.biortech.2015.04.122
Feng S, Li K, Huang Z, Tong Y, Yang H (2019) Specific mechanism of Acidithiobacillus caldus extracellular polymeric substances in the bioleaching of copper-bearing sulfide ore. PLoS One 14(4):e0213945. https://doi.org/10.1371/journal.pone.0213945
Feng S, Hou S, Cui Y, Tong Y, Yang H (2020) Metabolic transcriptional analysis on copper tolerance in moderate thermophilic bioleaching microorganism Acidithiobacillus caldus. J Ind Microbiol Biotechnol 47(1):21–33. https://doi.org/10.1007/s10295-019-02247-6
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