Head and neck cancer N-glycome traits are cell line and HPV status–dependent

Sklan A, Collingridge D. Treating head and neck cancer: for better or for worse? Lancet Oncol. 2017;18(5):570–1. https://doi.org/10.1016/S1470-2045(17)30269-3.

Article  PubMed  Google Scholar 

Rasheduzzaman M, Kulasinghe A, Dolcetti R, Kenny L, Johnson NW, Kolarich D. Punyadeera C (2020) Protein glycosylation in head and neck cancers: from diagnosis to treatment. Biochim Biophys Acta Rev Cancer. 1874;2: 188422. https://doi.org/10.1016/j.bbcan.2020.188422.

Article  CAS  Google Scholar 

Ovchinnikov DA, Wan Y, Coman WB, Pandit P, Cooper-White JJ, Herman JG, Punyadeera C. DNA methylation at the novel CpG sites in the promoter of MED15/PCQAP gene as a biomarker for head and neck cancers. Biomark Insights. 2014;9:53–60. https://doi.org/10.4137/bmi.S16199.

Article  PubMed  PubMed Central  Google Scholar 

Schmidt H, Kulasinghe A, Kenny L, Punyadeera C. The development of a liquid biopsy for head and neck cancers. Oral Oncol. 2016;61:8–11. https://doi.org/10.1016/j.oraloncology.2016.07.014.

Article  CAS  PubMed  Google Scholar 

Jayaram SC, Muzaffar SJ, Ahmed I, Dhanda J, Paleri V, Mehanna H. Efficacy, outcomes, and complication rates of different surgical and nonsurgical treatment modalities for recurrent/residual oropharyngeal carcinoma: a systematic review and meta-analysis. Head Neck. 2016;38(12):1855–61. https://doi.org/10.1002/hed.24531.

Article  PubMed  Google Scholar 

Maxwell JH, Grandis JR, Ferris RL. HPV-associated head and neck cancer: unique features of epidemiology and clinical management. Annu Rev Med. 2016;67:91–101. https://doi.org/10.1146/annurev-med-051914-021907.

Article  CAS  PubMed  Google Scholar 

Lim Y, Wan Y, Vagenas D, Ovchinnikov DA, Perry CF, Davis MJ, Punyadeera C. Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers. BMC Cancer. 2016;16(1):749. https://doi.org/10.1186/s12885-016-2785-0.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fujima N, Homma A, Harada T, Shimizu Y, Tha KK, Kano S, Mizumachi T, Li R, Kudo K, Shirato H. The utility of MRI histogram and texture analysis for the prediction of histological diagnosis in head and neck malignancies. Cancer Imaging. 2019;19(1):5. https://doi.org/10.1186/s40644-019-0193-9.

Article  PubMed  PubMed Central  Google Scholar 

Yan K, Agrawal N, Gooi Z. Head and neck masses. Med Clin North Am. 2018;102(6):1013–25. https://doi.org/10.1016/j.mcna.2018.06.012.

Article  PubMed  Google Scholar 

Almeida A. Kolarich D (2016) The promise of protein glycosylation for personalised medicine. Biochem Biophys Acta. 1860;8:1583–95. https://doi.org/10.1016/j.bbagen.2016.03.012.

Article  CAS  Google Scholar 

Vajaria BN, Patel KR, Begum R, Patel JB, Shah FD, Joshi GM, Patel PS. Salivary Glyco-sialylation changes monitors oral carcinogenesis. Glycoconj J. 2014;31(9):649–59. https://doi.org/10.1007/s10719-014-9561-7.

Article  CAS  PubMed  Google Scholar 

Guu S-Y, Lin T-H, Chang S-C, Wang R-J, Hung L-Y, Fang P-J, Tang W-C, Yu P, Chang C-F. Serum N-glycome characterization and anti-carbohydrate antibody profiling in oral squamous cell carcinoma patients. PLoS ONE. 2017;12(6): e0178927. https://doi.org/10.1371/journal.pone.0178927.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lin W-L, Lin Y-S, Shi G-Y, Chang C-F, Wu H-L. Lewisy promotes migration of oral cancer cells by glycosylation of epidermal growth factor receptor. PLoS ONE. 2015;10(3): e0120162. https://doi.org/10.1371/journal.pone.0120162.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Desiderio V, Papagerakis P, Tirino V, Zheng L, Matossian M, Prince ME, Paino F, Mele L, Papaccio F, Montella R, Papaccio G, Papagerakis S. Increased fucosylation has a pivotal role in invasive and metastatic properties of head and neck cancer stem cells. Oncotarget. 2015;6(1):71–84. https://doi.org/10.18632/oncotarget.2698.

Article  PubMed  Google Scholar 

Chiang WF, Cheng TM, Chang CC, Pan SH, Changou CA, Chang TH, Lee KH, Wu SY, Chen YF, Chuang KH, Shieh DB, Chen YL, Tu CC, Tsui WL, Wu MH. Carcinoembryonic antigen-related cell adhesion molecule 6 (CEACAM6) promotes EGF receptor signaling of oral squamous cell carcinoma metastasis via the complex N-glycosylation. Oncogene. 2018;37(1):116–27. https://doi.org/10.1038/onc.2017.303.

Article  CAS  PubMed  Google Scholar 

Hinneburg H, Korac P, Schirmeister F, Gasparov S, Seeberger PH, Zoldos V, Kolarich D. Unlocking cancer glycomes from histopathological formalin-fixed and paraffin-embedded (FFPE) tissue microdissections. Mol Cell Proteomics. 2017;16(4):524–36. https://doi.org/10.1074/mcp.M116.062414.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jensen PH, Karlsson NG, Kolarich D, Packer NH. Structural analysis of N- and O-glycans released from glycoproteins. Nat Protoc. 2012;7(7):1299–310. https://doi.org/10.1038/nprot.2012.063.

Article  CAS  PubMed  Google Scholar 

Oliveira T, Zhang M, Joo EJ, Abdel-Azim H, Chen CW, Yang L, Chou CH, Qin X, Chen J, Alagesan K, Almeida A, Jacob F, Packer NH, von Itzstein M, Heisterkamp N, Kolarich D. Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. Theranostics. 2021;11(19):9519–37. https://doi.org/10.7150/thno.65398.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP. Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS. J Am Soc Mass Spectrom. 2013;24(6):895–906. https://doi.org/10.1007/s13361-013-0610-4.

Article  CAS  PubMed  Google Scholar 

Campbell MP, Abrahams JL, Rapp E, Struwe WB, Costello CE, Novotny M, Ranzinger R, York WS, Kolarich D, Rudd PM, Kettner C. The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines. Glycobiology. 2019;29(5):349–54. https://doi.org/10.1093/glycob/cwz009.

Article  CAS  PubMed  Google Scholar 

Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data. Mol Cell Proteomics. 2013;12(4):991–5. https://doi.org/10.1074/mcp.O112.026492.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten F, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology. 2016;26(9):907–10. https://doi.org/10.1093/glycob/cww082.

Article  CAS  PubMed  PubMed Central  Google Scholar 

York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology. 2014;24(5):402–6. https://doi.org/10.1093/glycob/cwu018.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Robin T, Mariethoz J, Lisacek F. Examining and fine-tuning the selection of glycan compositions with GlyConnect compozitor. Mol Cell Proteomics. 2020;19(10):1602–18. https://doi.org/10.1074/mcp.RA120.002041.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Watanabe Y, Aoki-Kinoshita KF, Ishihama Y, Okuda S. GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res. 2021;49(D1):D1523–8. https://doi.org/10.1093/nar/gkaa1012.

Article  PubMed  Google Scholar 

Wan Y, Vagenas D, Salazar C, Kenny L, Perry C, Calvopiña D, Punyadeera C. Salivary miRNA panel to detect HPV-positive and HPV-negative head and neck cancer patients. Oncotarget. 2017;8(59):99990–100001. https://doi.org/10.18632/oncotarget.21725.

Article  PubMed  PubMed Central  Google Scholar 

Satapathy S, Batra J, Jeet V, Thompson EW, Punyadeera C. MicroRNAs in HPV associated cancers: small players with big consequences. Expert Rev Mol Diagn. 2017;17(7):711–22. https://doi.org/10.1080/14737159.2017.1339603.

Article  CAS  PubMed  Google Scholar 

Harris M, Wang XG, Jiang Z, Goldberg GL, Casadevall A, Dadachova E. Radioimmunotherapy of experimental head and neck squamous cell carcinoma (HNSCC) with E6-specific antibody using a novel HPV-16 positive HNSCC cell line. Head Neck Oncol. 2011;3(1):9. https://doi.org/10.1186/1758-3284-3-9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alam S, Anugraham M, Huang YL, Kohler RS, Hettich T, Winkelbach K, Grether Y, Lopez MN, Khasbiullina N, Bovin NV, Schlotterbeck G, Jacob F. Altered (neo-) lacto series glycolipid biosynthesis impairs alpha2-6 sialylation on N-glycoproteins in ovarian cancer cells. Sci Rep. 2017;7:45367. https://doi.org/10.1038/srep45367.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alagesan K, Everest-Dass A, Kolarich D. Isomeric separation and characterisation of glycoconjugates. Adv Exp Med Biol. 2018;1104:77–99. https://doi.org/10.1007/978-981-13-2158-0_5.

Article  CAS  PubMed  Google Scholar 

Pabst M, Bondili JS, Stadlmann J, Mach L, Altmann F. Mass + retention time = structure: a strategy for the analysis of N-glycans by carbon LC-ESI-MS and its application to fibrin N-glycans. Anal Chem. 2007;79(13):5051–7. https://doi.org/10.1021/ac070363i.

Article  CAS  PubMed  Google Scholar 

Moginger U, Grunewald S, Hennig R, Kuo CW, Schirmeister F, Voth H, Rapp E, Khoo KH, Seeberger PH, Simon JC, Kolarich D. Alterations of the human skin N- and O-glycome in basal cell carcinoma and squamous cell carcinoma. Front Oncol. 2018;8:70. https://doi.org/10.3389/fonc.2018.00070.

Article 

留言 (0)

沒有登入
gif