Proteomics Insights into Medullary Sponge Kidney Disease: Review of the Recent Results of an Italian Research Collaborative Network

Abstract

Background: Medullary sponge kidney (MSK) disease is a rare and neglected congenital condition typically associated with nephrocalcinosis/nephrolithiasis, urinary concentration defects, and cystic anomalies in the precalyceal ducts that, although sporadic in the general population, is relatively frequent in renal stone formers. The physiopathologic mechanism associated with this disease is not fully understood, and omics technologies may help address this gap. Summary: The aim of this review was to provide an overview of the current state of the application of proteomics in the study of this rare disease. In particular, we focused on the results of our recent Italian collaborative studies that, analyzing the MSK whole and extracellular vesicle urinary content by mass spectrometry, have displayed the existence of a large and multifactorial MSK-associated biological machinery and identified some main regulatory biological elements able to discriminate patients affected by this rare disorder from those with idiopathic calcium nephrolithiasis and autosomal dominant polycystic kidney disease (including laminin subunit alpha 2, ficolin 1, mannan-binding lectin serine protease 2, complement component 4-binding protein β, sphingomyelin, ephrins). Key Messages: The application of omics technologies has provided new insights into the comprehension of the physiopathology of the MSK disease and identified novel potential diagnostic biomarkers that may replace in future expensive and invasive radiological tests (including CT) and select novel therapeutic targets potentially employable, whether validated in a large cohort of patients, in the daily clinical practice.

© 2022 The Author(s). Published by S. Karger AG, Basel

References Fabris A, Anglani F, Lupo A, Gambaro G. Medullary sponge kidney: state of the art. Nephrol Dial Transplant. 2013 May;28(5):1111–9. Gambaro G, Feltrin GP, Lupo A, Bonfante L, D’Angelo A, Antonello A. Medullary sponge kidney (Lenarduzzi-Cacchi-Ricci disease): a padua medical school discovery in the 1930s. Kidney Int. 2006 Feb;69(4):663–70. Lambrianides AL, John DR. Medullary sponge disease in horseshoe kidney. Urology. 1987 Apr;29(4):426–7. Gambaro G, Fabris A, Citron L, Tosetto E, Anglani F, Bellan F, et al. An unusual association of contralateral congenital small kidney reduced renal function and hyperparathyroidism in sponge kidney patients: on the track of the molecular basis. Nephrol Dial Transplant. 2005 Jun;20(6):1042–7. Rommel D, Pirson Y. Medullary sponge kidney: part of a congenital syndrome. Nephrol Dial Transplant. 2001 Mar;16(3):634–6. Fabris A, Lupo A, Ferraro PM, Anglani F, Pei Y, Danza FM, et al. Familial clustering of medullary sponge kidney is autosomal dominant with reduced penetrance and variable expressivity. Kidney Int. 2013 Feb;83(2):272–7. Diouf B, Fary Ka EH, Calender A, Giraud S, Diop TM. Association of medullary sponge kidney disease and multiple endocrine neoplasia type IIA due to RET gene mutation: is there a causal relationship? Nephrol Dial Transplant. 2000 Dec;15(12):2062–3. Torregrossa R, Anglani F, Fabris A, Gozzini A, Tanini A, Del Prete D, et al. Identification of GDNF gene sequence variations in patients with medullary sponge kidney disease. Clin J Am Soc Nephrol. 2010 Jul;5(7):1205–10. Desgrange A, Heliot C, Skovorodkin I, Akram SU, Heikkilä J, Ronkainen VP, et al. HNF1B controls epithelial organization and cell polarity during ureteric bud branching and collecting duct morphogenesis. Development. 2017 Dec 15;144(24):4704–19. Kolatsi-Joannou M, Bingham C, Ellard S, Bulman MP, Allen LIS, Hattersley AT, et al. Hepatocyte nuclear factor-1beta: a new kindred with renal cysts and diabetes and gene expression in normal human development. J Am Soc Nephrol. 2001 Oct;12(10):2175–80. Xiang H, Han J, Ridley WE, Ridley LJ. Medullary sponge kidney. J Med Imaging Radiat Oncol. 2018;62:93–4. Gaunay GS, Berkenblit RG, Tabib CH, Blitstein JR, Patel M, Hoenig DM. Efficacy of multi-detector computed tomography for the diagnosis of medullary sponge kidney. Curr Urol. 2018;11(3):139–43. Kalantari S, Jafari A, Moradpoor R, Ghasemi E, Khalkhal E. Human urine proteomics: analytical techniques and clinical applications in renal diseases. Int J Proteomics. 2015;2015:782798. Afkarian M, Bhasin M, Dillon ST, Guerrero MC, Nelson RG, Knowler WC, et al. Optimizing a proteomics platform for urine biomarker discovery. Mol Cell Proteomics. 2010 Oct;9(10):2195–204. Aslam B, Basit M, Nisar MA, Khurshid M, Rasool MH. Proteomics: technologies and their applications. J Chromatogr Sci. 2017 Feb;55(2):182–96. Fabris A, Bruschi M, Santucci L, Candiano G, Granata S, Dalla Gassa A, et al. Proteomic-based research strategy identified laminin subunit alpha 2 as a potential urinary-specific biomarker for the medullary sponge kidney disease. Kidney Int. 2017 Feb;91(2):459–68. Colognato H, Yurchenco PD. Form and function: the laminin family of heterotrimers. Dev Dyn. 2000 Jun;218(2):213–34. Hamill KJ, Kligys K, Hopkinson SB, Jones JCR. Laminin deposition in the extracellular matrix: a complex picture emerges. J Cell Sci. 2009 Dec 15;122(Pt 24):4409–17. O’Brien LE, Jou TS, Pollack AL, Zhang Q, Hansen SH, Yurchenco P, et al. Rac1 orientates epithelial apical polarity through effects on basolateral laminin assembly. Nat Cell Biol. 2001 Sep;3(9):831–8. Shannon MB, Patton BL, Harvey SJ, Miner JH. A hypomorphic mutation in the mouse laminin α5 gene causes polycystic kidney disease. J Am Soc Nephrol. 2006 Jul;17(7):1913–22. Joly D, Berissi S, Bertrand A, Strehl L, Patey N, Knebelmann B. Laminin 5 regulates polycystic kidney cell proliferation and cyst formation. J Biol Chem. 2006 Sep 29;281(39):29181–9. Vijayakumar S, Dang S, Marinkovich MP, Lazarova Z, Yoder B, Torres VE, et al. Aberrant expression of laminin-332 promotes cell proliferation and cyst growth in ARPKD. Am J Physiol Renal Physiol. 2014 Mar 15;306(6):F640–54. Filmus J, Selleck SB. Glypicans: proteoglycans with a surprise. J Clin Invest. 2001 Aug;108(4):497–501. Fico A, Maina F, Dono R. Fine-tuning of cell signaling by glypicans. Cell Mol Life Sci. 2011 Mar;68(6):923–9. Gengrinovitch S, Berman B, David G, Witte L, Neufeld G, Ron D. Glypican-1 is a VEGF165 binding proteoglycan that acts as an extracellular chaperone for VEGF165. J Biol Chem. 1999 Apr 16;274(16):10816–22. Steinfeld R, Van Den Berghe H, David G. Stimulation of fibroblast growth factor receptor-1 occupancy and signaling by cell surface-associated syndecans and glypican. J Cell Biol. 1996 Apr;133(2):405–16. Bonneh-Barkay D, Shlissel M, Berman B, Shaoul E, Admon A, Vlodavsky I, et al. Identification of glypican as a dual modulator of the biological activity of fibroblast growth factors. J Biol Chem. 1997 May 9;272(19):12415–21. Kleeff J, Ishiwata T, Kumbasar A, Friess H, Büchler MW, Lander AD, et al. The cell-surface heparan sulfate proteoglycan glypican-1 regulates growth factor action in pancreatic carcinoma cells and is overexpressed in human pancreatic cancer. J Clin Invest. 1998 Nov 1;102(9):1662–73. Fabris A, Lupo A, Bernich P, Abaterusso C, Marchionna N, Nouvenne A, et al. Long-term treatment with potassium citrate and renal stones in medullary sponge kidney. Clin J Am Soc Nephrol. 2010 Sep;5(9):1663–8. Heijnen HF, Schiel AE, Fijnheer R, Geuze HJ, Sixma JJ. Activated platelets release two types of membrane vesicles: microvesicles by surface shedding and exosomes derived from exocytosis of multivesicular bodies and alpha-granules. Blood. 1999 Dec 1;94(11):3791–9. Camussi G, Deregibus MC, Bruno S, Cantaluppi V, Biancone L. Exosomes/microvesicles as a mechanism of cell-to-cell communication. Kidney Int. 2010 Nov;78(9):838–48. Dear JW, Street JM, Bailey MA. Urinary exosomes: a reservoir for biomarker discovery and potential mediators of intrarenal signalling. Proteomics. 2013 May;13(10–11):1572–80. Salih M, Zietse R, Hoorn EJ. Urinary extracellular vesicles and the kidney: biomarkers and beyond. Am J Physiol Renal Physiol. 2014 Jun 1;306(11):F1251–9. Panfoli I, Granata S, Candiano G, Verlato A, Lombardi G, Bruschi M, et al. Analysis of urinary exosomes applications for rare kidney disorders. Expert Rev Proteomics. 2020 Oct;17(10):735–49. Mause SF, Weber C. Microparticles: protagonists of a novel communication network for intercellular information exchange. Circ Res. 2010 Oct 29;107(9):1047–57. Valadi H, Ekström K, Bossios A, Sjöstrand M, Lee JJ, Lötvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007 Jun;9(6):654–9. Pisitkun T, Shen RF, Knepper MA. Identification and proteomic profiling of exosomes in human urine. Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13368–73. Moon PG, You S, Lee JE, Hwang D, Baek MC. Urinary exosomes and proteomics. Mass Spectrom Rev. 2011 Nov–Dec;30(6):1185–202. Pei Y, Obaji J, Dupuis A, Paterson AD, Magistroni R, Dicks E, et al. Unified criteria for ultrasonographic diagnosis of ADPKD. J Am Soc Nephrol. 2009 Jan;20(1):205–12. Bruschi M, Granata S, Santucci L, Candiano G, Fabris A, Antonucci N, et al. Proteomic analysis of urinary microvesicles and exosomes in medullary sponge kidney disease and autosomal dominant polycystic kidney disease. Clin J Am Soc Nephrol. 2019 Jun 7;14(6):834–43. Fabris A, Bernich P, Abaterusso C, Marchionna N, Canciani C, Nouvenne A, et al. Bone disease in medullary sponge kidney and effect of potassium citrate treatment. Clin J Am Soc Nephrol. 2009 Dec;4(12):1974–9. Ria P, Fabris A, Dalla Gassa A, Zaza G, Lupo A, Gambaro G. New non-renal congenital disorders associated with medullary sponge kidney (MSK) support the pathogenic role of GDNF and point to the diagnosis of MSK in recurrent stone formers. Urolithiasis. 2017 Aug;45(4):359–62. Granata S, Bruschi M, Deiana M, Petretto A, Lombardi G, Verlato A, et al. Sphingomyelin and medullary sponge kidney disease: a biological link identified by omics approach. Front Med. 2021 May 26;8:671798. Ibáñez CF, Andressoo JO. Biology of GDNF and its receptors: relevance for disorders of the central nervous system. Neurobiol Dis. 2017 Jan;97(Pt B):80–9. Bouscary A, Quessada C, René F, Spedding M, Turner BJ, Henriques A, et al. Sphingolipids metabolism alteration in the central nervous system: amyotrophic lateral sclerosis (ALS) and other neurodegenerative diseases. Semin Cell Dev Biol. 2021 Apr;112:82–91. O’Neill M, Breslau NA, Pak CY. Metabolic evaluation of nephrolithiasis in patients with medullary sponge kidney. JAMA. 1981 Mar 27;245(12):1233–6. Osther PJ, Mathiasen H, Hansen AB, Nissen HM. Urinary acidification and urinary excretion of calcium and citrate in women with bilateral medullary sponge kidney. Urol Int. 1994;52(3):126–30. Morita J, Kano K, Kato K, Takita H, Sakagami H, Yamamoto Y, et al. Structure and biological function of ENPP6, a choline-specific glycerophosphodiesterphosphodiesterase. Sci Rep. 2016 Feb 18;6:20995. Stewart AJ, Leong DTK, Farquharson C. PLA2 and ENPP6 may act in concert to generate phosphocholine from the matrix vesicle membrane during skeletal mineralization. FASEB J. 2018 Jan;32(1):20–5. Khan SR, Glenton PA, Backov R, Talham DR. Presence of lipids in urine, crystals and stones: implications for the formation of kidney stones. Kidney Int. 2002 Dec;62(6):2062–72. McKee MD, Nanci A. Osteopontin: an interfacial extracellular matrix protein in mineralized tissues. Connect Tissue Res. 1996;35(1–4):197–205. Reinholt FP, Hultenby K, Oldberg A, Heinegård D. Osteopontin: a possible anchor of osteoclasts to bone. Proc Natl Acad Sci U S A. 1990 Jun;87(12):4473–5. Ricci P, Magalhães P, Krochmal M, Pejchinovski M, Daina E, Caruso MR, et al. Urinary proteome signature of renal cysts and diabetes syndrome in children. Sci Rep. 2019 Feb 18;9(1):2225. Cowley BD, Jr, Ricardo SD, Nagao S, Diamond JR. Increased renal expression of monocyte chemoattractant protein-1 and osteopontin in ADPKD in rats. Kidney Int. 2001 Dec;60(6):2087–96. Bruschi M, Granata S, Candiano G, Fabris A, Petretto A, Ghiggeri GM, et al. Proteomic analysis of urinary extracellular vesicles reveals a role for the complement system in medullary sponge kidney disease. Int J Mol Sci. 2019 Nov 5;20(21):5517. Salvadori M, Rosso G, Bertoni E. Complement involvement in kidney diseases: from physiopathology to therapeutical targeting. World J Nephrol. 2015 May 6;4(2):169–84. Bruschi M, Granata S, Petretto A, Verlato A, Ghiggeri GM, Stallone G, et al. A comprehensive proteomics analysis of urinary extracellular vesicles identifies a specific kinase protein profile as a novel hallmark of medullary sponge kidney disease. Kidney Int Rep. 2022;7(6):1420–3. Fagotto F, Winklbauer R, Rohani N. Ephrin-Eph signaling in embryonic tissue separation. Cell Adh Migr. 2014;8(4):308–26. Hiltunen JO, Laurikainen A, Airaksinen MS, Saarma M. GDNF family receptors in the embryonic and postnatal rat heart and reduced cholinergic innervation in mice hearts lacking ret or GFRalpha2. Dev Dyn. 2000 Sep;219(1):28–39. Homma S, Oppenheim RW, Yaginuma H, Kimura S. Expression pattern of GDNF, c-ret, and GFRαs suggests novel roles for GDNF ligands during early organogenesis in the chick embryo. Dev Biol. 2000 Jan 1;217(1):121–37. Weiss AC, Kispert A. Eph/ephrin signaling in the kidney and lower urinary tract. Pediatr Nephrol. 2016 Mar;31(3):359–71. Article / Publication Details

First-Page Preview

Abstract of Review Article

Received: June 17, 2022
Accepted: September 16, 2022
Published online: October 20, 2022

Number of Print Pages: 10
Number of Figures: 1
Number of Tables: 1

ISSN: 1420-4096 (Print)
eISSN: 1423-0143 (Online)

For additional information: https://www.karger.com/KBR

Figures Thumbnail Tables Thumbnail

留言 (0)

沒有登入
gif