Agrawal G, Subramani S (2013) Emerging role of the endoplasmic reticulum in peroxisome biogenesis. Front Physiol. https://doi.org/10.3389/fphys.2013.00286

Article  PubMed  PubMed Central  Google Scholar 

Agrawal G, Subramani S (2016) De novo peroxisome biogenesis: evolving concepts and conundrums. Biochim Biophys Acta 1863:892–901. https://doi.org/10.1016/j.bbamcr.2015.09.014

Article  PubMed  CAS  Google Scholar 

Agrawal G, Joshi S, Subramani S (2011) Cell-free sorting of peroxisomal membrane proteins from the endoplasmic reticulum. Proc Natl Acad Sci 108:9113–9118. https://doi.org/10.1073/pnas.1018749108

Article  PubMed  PubMed Central  Google Scholar 

Agrawal G, Shang HH, Xia ZJ, Subramani S (2017) Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis. J Biol Chem 292:11547–11560. https://doi.org/10.1074/jbc.M116.774067

Akşit A, van der Klei IJ (2018) Yeast peroxisomes: How are they formed and how do they grow? Int J Biochem Cell Biol 105:24–34. https://doi.org/10.1016/j.biocel.2018.09.019

Article  PubMed  CAS  Google Scholar 

Bascom RA, Chan H, Rachubinski RA (2003) Peroxisome biogenesis occurs in an unsynchronized manner in close association with the endoplasmic reticulum in temperature-sensitive Yarrowia lipolytica Pex3p mutants. Mol Biol Cell 14:939–957. https://doi.org/10.1091/mbc.e02-10-0633

Article  PubMed  PubMed Central  CAS  Google Scholar 

Binns D, Januszewski T, Chen Y, Hill J, Markin VS, Zhao Y, Gilpin C, Chapman KD, Anderson RGW, Goodman JM (2006) An intimate collaboration between peroxisomes and lipid bodies. J Cell Biol 173:719–731. https://doi.org/10.1083/jcb.200511125

Article  PubMed  PubMed Central  CAS  Google Scholar 

Brown TW, Titorenko VI, Rachubinski RA (2000) Mutants of the Yarrowia lipolytica PEX23 gene encoding an integral peroxisomal membrane peroxin mislocalize matrix proteins and accumulate vesicles containing peroxisomal matrix and membrane proteins. Mol Biol Cell 11:141–152. https://doi.org/10.1091/mbc.11.1.141

Article  PubMed  PubMed Central  CAS  Google Scholar 

Carmichael RE, Schrader M (2022) Determinants of peroxisome membrane dynamics. Front Physiol. https://doi.org/10.3389/fphys.2022.834411

Article  PubMed  PubMed Central  Google Scholar 

Cepińska MN, Veenhuis M, van der Klei IJ, Nagotu S (2011) Peroxisome fission is associated with reorganization of specific membrane proteins. Traffic 12:925–937. https://doi.org/10.1111/j.1600-0854.2011.01198.x

Article  PubMed  CAS  Google Scholar 

Chang J, Mast FD, Fagarasanu A, Rachubinski DA, Eitzen GA, Dacks JB, Rachubinski RA (2009) Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors. J Cell Biol 187:233–246. https://doi.org/10.1083/jcb.200902117

Article  PubMed  PubMed Central  CAS  Google Scholar 

Chang J, Klute MJ, Tower RJ, Mast FD, Dacks JB, Rachubinski RA (2015) An ancestral role in peroxisome assembly is retained by the divisional peroxin Pex11 in the yeast Yarrowia lipolytica. J Cell Sci 128:1327–1340. https://doi.org/10.1242/jcs.157743

Article  PubMed  CAS  Google Scholar 

Choudhary V, El Atab O, Mizzon G, Prinz WA, Schneiter R (2020) Seipin and Nem1 establish discrete ER subdomains to initiate yeast lipid droplet biogenesis. J Cell Biol. https://doi.org/10.1083/jcb.201910177

Article  PubMed  PubMed Central  Google Scholar 

Cohen Y, Klug YA, Dimitrov L, Erez Z, Chuartzman SG, Elinger D, Yofe I, Soliman K, Gärtner J, Thoms S, Schekman R, Elbaz-Alon Y, Zalckvar E, Schuldiner M (2014) Peroxisomes are juxtaposed to strategic sites on mitochondria. Mol BioSyst 10:1742–1748. https://doi.org/10.1039/C4MB00001C

Article  PubMed  CAS  Google Scholar 

Dahan N, Bykov YS, Boydston EA, Fadel A, Gazi Z, Hochberg-Laufer H, Martenson J, Denic V, Shav-Tal Y, Weissman JS, Aviram N, Zalckvar E, Schuldiner M (2022) Peroxisome function relies on organelle-associated mRNA translation. Sci Adv 8:1. https://doi.org/10.1126/sciadv.abk2141

Article  CAS  Google Scholar 

David C, Koch J, Oeljeklaus S, Laernsack A, Melchior S, Wiese S, Schummer A, Erdmann R, Warscheid B, Brocard C (2013) A combined approach of quantitative interaction proteomics and live-cell imaging reveals a regulatory role for endoplasmic reticulum (ER) reticulon homology proteins in peroxisome biogenesis. Mol Cell Proteomics 12:2408–2425. https://doi.org/10.1074/mcp.M112.017830

Article  PubMed  PubMed Central  CAS  Google Scholar 

Demarquoy J, Le Borgne F (2015) Crosstalk between mitochondria and peroxisomes. World J Biol Chem 6:301–309. https://doi.org/10.4331/wjbc.v6.i4.301

Article  PubMed  PubMed Central  Google Scholar 

Deori NM, Infant T, Sundaravadivelu PK, Thummer RP, Nagotu S (2022) Pex30 undergoes phosphorylation and regulates peroxisome number in Saccharomyces cerevisiae. Mol Genet Genomics 297:573–590. https://doi.org/10.1007/s00438-022-01872-8

Article  PubMed  CAS  Google Scholar 

Effelsberg D, Cruz-Zaragoza LD, Schliebs W, Erdmann R (2016) Pex9p is a new yeast peroxisomal import receptor for PTS1-containing proteins. J Cell Sci 129:4057–4066. https://doi.org/10.1242/jcs.195271

Article  PubMed  CAS  Google Scholar 

Erdmann R, Blobel G (1995) Giant peroxisomes in oleic acid-induced Saccharomyces cerevisiae lacking the peroxisomal membrane protein Pmp27p. J Cell Biol 128:509–523. https://doi.org/10.1083/jcb.128.4.509

Article  PubMed  CAS  Google Scholar 

Esposito M, Hermann-Le Denmat S, Delahodde A (2019) Contribution of ERMES subunits to mature peroxisome abundance. PLoS ONE 14:e0214287. https://doi.org/10.1371/journal.pone.0214287

Article  PubMed  PubMed Central  CAS  Google Scholar 

Fagarasanu A, Fagarasanu M, Eitzen GA, Aitchison JD, Rachubinski RA (2006) The peroxisomal membrane protein Inp2p is the peroxisome-specific receptor for the myosin V motor Myo2p of Saccharomyces cerevisiae. Dev Cell 10:587–600. https://doi.org/10.1016/j.devcel.2006.04.012

Article  PubMed  CAS  Google Scholar 

Fang Y, Morrell JC, Jones JM, Gould SJ (2004) PEX3 functions as a PEX19 docking factor in the import of class I peroxisomal membrane proteins. J Cell Biol 164:863–875. https://doi.org/10.1083/jcb.200311131

Article  PubMed  PubMed Central  CAS  Google Scholar 

Farré J-C, Carolino K, Stasyk OV, Stasyk OG, Hodzic Z, Agrawal G, Till A, Proietto M, Cregg J, Sibirny AA, Subramani S (2017) A new yeast peroxin, Pex36, a functional homolog of mammalian PEX16, functions in the ER-to-peroxisome traffic of peroxisomal membrane proteins. J Mol Biol 429:3743–3762. https://doi.org/10.1016/j.jmb.2017.10.009

Article  PubMed  PubMed Central  CAS  Google Scholar 

Farre J-C, Carolino K, Devanneaux L, Subramani S (2022) OXPHOS deficiencies affect peroxisome proliferation by downregulating genes controlled by the SNF1 signaling pathway. Elife 11:e75143. https://doi.org/10.7554/eLife.75143

Article  PubMed  PubMed Central  CAS  Google Scholar 

Farré J-C, Mahalingam SS, Proietto M, Subramani S (2019) Peroxisome biogenesis, membrane contact sites, and quality control. EMBO Rep 20:e46864. https://doi.org/10.15252/embr.201846864

Ferreira JV, Carvalho P (2021) Pex30-like proteins function as adaptors at distinct ER membrane contact sites. J Cell Biol 220:e202103176. https://doi.org/10.1083/jcb.202103176

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gabay-Maskit S, Cruz-Zaragoza LD, Shai N, Eisenstein M, Bibi C, Cohen N, Hansen T, Yifrach E, Harpaz N, Belostotsky R, Schliebs W, Schuldiner M, Erdmann R, Zalckvar E (2020) A piggybacking mechanism enables peroxisomal localization of the glyoxylate cycle enzyme Mdh2 in yeast. J Cell Sci. https://doi.org/10.1242/jcs.244376

Article  PubMed  PubMed Central  Google Scholar 

Götte K, Girzalsky W, Linkert M, Baumgart E, Kammerer S, Kunau W-H, Erdmann R (1998) Pex19p, a farnesylated protein essential for peroxisome biogenesis. Mol Cell Biol 18:616–628. https://doi.org/10.1128/MCB.18.1.616

Article  PubMed  PubMed Central  Google Scholar 

Haan G-J, Baerends RJS, Krikken AM, Otzen M, Veenhuis M, van der Klei IJ (2006) Reassembly of peroxisomes in Hansenula polymorpha Pex3 cells on reintroduction of Pex3p involves the nuclear envelope. FEMS Yeast Res 6:186–194. https://doi.org/10.1111/j.1567-1364.2006.00037.x

Article  PubMed  CAS  Google Scholar 

Hasan S, Platta HW, Erdmann R (2013) Import of proteins into the peroxisomal matrix. Front Physiol 4:261. https://doi.org/10.3389/fphys.2013.00261

Article  PubMed  PubMed Central  Google Scholar 

Helle SCJ, Kanfer G, Kolar K, Lang A, Michel AH, Kornmann B (2013) Organization and function of membrane contact sites. Biochim Biophys Acta (BBA) Mol Cell Res 1833:2526–2541. https://doi.org/10.1016/j.bbamcr.2013.01.028

Article  CAS  Google Scholar 

Hettema EH, Girzalsky W, van Den Berg M, Erdmann R, Distel B (2000) Saccharomyces cerevisiae Pex3p and Pex19p are required for proper localization and stability of peroxisomal membrane proteins. EMBO J 19:223–233. https://doi.org/10.1093/emboj/19.2.223

Article  PubMed  PubMed Central  CAS  Google Scholar 

Hoepfner D, Schildknegt D, Braakman I, Philippsen P, Tabak HF (2005) Contribution of the endoplasmic reticulum to peroxisome formation. Cell 122:85–95. https://doi.org/10.1016/j.cell.2005.04.025

Article  PubMed  CAS  Google Scholar 

Huber A, Koch J, Kragler F, Brocard C, Hartig A (2012) A subtle interplay between three Pex11 proteins shapes de novo formation and fission of peroxisomes. Traffic 13:157–167. https://doi.org/10.1111/j.1600-0854.2011.01290.x

Article  PubMed  CAS  Google Scholar 

Infant T, Deb R, Ghose S, Nagotu S (2021) Post-translational modifications of proteins associated with yeast peroxisome membrane: an essential mode of regulatory mechanism. Genes Cells.