Al-Hashimi A, Venugopalan V, Sereesongsaeng N, Tedelind S, Pinzaru AM, Hein Z et al (2020) Significance of nuclear cathepsin V in normal thyroid epithelial and carcinoma cells. Biochim Biophys Acta Mol Cell Res 1867(12):118846

CAS  PubMed  Google Scholar 

Bian W, Jiang XX, Wang Z, Zhu YR, Zhang H, Li X et al (2021) Comprehensive analysis of the ceRNA network in coronary artery disease. Sci Rep 11(1):1–11

CAS  Google Scholar 

Brito JP, Morris JC, Montori VM (2013)Thyroid cancer: zealous imaging has increased detection and treatment of low risk tumours. Bmj 347

Cai Y, Wan J (2018) Competing endogenous RNA regulations in neurodegenerative disorders: current challenges and emerging insights. Front Mol Neurosci 11:370

CAS  PubMed  PubMed Central  Google Scholar 

Chin CH, Chen SH, Wu HH, Ho CW, Ko MT, Lin CY (2014) cytoHubba: identifying hub objects and sub-networks from complex interactome. BMC Syst Biol 8(Supp 4):S11

PubMed  PubMed Central  Google Scholar 

Dong M, Xie Y, Xu Y (2019) miR-7-5p regulates the proliferation and migration of colorectal cancer cells by negatively regulating the expression of Krüppel-like factor 4. Oncol Lett 17(3):3241–3246

CAS  PubMed  PubMed Central  Google Scholar 

Esteller M (2011) Non-coding RNAs in human disease. Nat Rev Genet 12(12):861–74

CAS  PubMed  Google Scholar 

Expansion of the Gene (2017) Ontology knowledgebase and resources. Nucleic Acids Res 45(D1):D331–D338

Google Scholar 

Feinberg AP, Ohlsson R, Henikoff S (2006) The epigenetic progenitor origin of human cancer. Nat rev genet 7(1):21–33

CAS  PubMed  Google Scholar 

Goel MK, Khanna P, Kishore J (2010) Understanding survival analysis: kaplan-meier estimate. Int J Ayurveda Res 1(4):274

PubMed  PubMed Central  Google Scholar 

Gray RJ (2002) Modeling survival data: extending the cox model. J Am Stat Assoc 97(457):353–4. https://doi.org/10.1198/jasa.2002.s447

Article  Google Scholar 

Grillone K, Riillo C, Scionti F, Rocca R, Tradigo G, Guzzi PH et al (2020) Non-coding RNAs in cancer: platforms and strategies for investigating the genomic dark matter. J Exp Clin Cancer Res 39(1):117

CAS  PubMed  PubMed Central  Google Scholar 

Guo K, Qian K, Shi Y, Sun T, Wang Z (2021) LncRNA-MIAT promotes thyroid cancer progression and function as ceRNA to target EZH2 by sponging miR-150-5p. Cell Death Dis 12(12):1–12

Google Scholar 

He Z, Deng W, Jiang B, Liu S, Tang M, Liu Y et al (2018) Hsa-let-7b inhibits cell proliferation by targeting PLK1 in HCC. Gene 673:46–55. https://doi.org/10.1016/j.gene.2018.06.047

CAS  Article  PubMed  Google Scholar 

Huang Q, Zhou Y, Li Y, Liao Z (2020) GGCT promotes colorectal cancer migration and invasion via epithelial-mesenchymal transition. Oncol Lett 20(2):1063–70

CAS  PubMed  PubMed Central  Google Scholar 

Huang HY, Lin YCD, Li J, Huang KY, Shrestha S, Hong HC et al (2020) miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database. Nucleic Acids Res 48(D1):D148–D154

CAS  PubMed  Google Scholar 

Hui L, Zheng F, Bo Y, Sen-Lin M, Ai-Jun L, Wei-Ping Z et al (2020) MicroRNA let-7b inhibits cell proliferation via upregulation of p21 in hepatocellular carcinoma. Cell Biosci 10(1):83

CAS  PubMed  PubMed Central  Google Scholar 

Jeggari A, Marks DS, Larsson E (2012) miRcode: a map of putative microRNA target sites in the long non-coding transcriptome. Bioinformatics 28(15):2062–2063

CAS  PubMed  PubMed Central  Google Scholar 

Jiang MC, Ni JJ, Cui WY, Wang BY, Zhuo W (2019) Emerging roles of lncRNA in cancer and therapeutic opportunities. Am J Cancer Res 9(7):1354

CAS  PubMed  PubMed Central  Google Scholar 

Kanehisa M, Furumichi M, Tanabe M, Sato Y, Morishima K (2017) KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res 45(D1):D353-61

CAS  PubMed  Google Scholar 

Kang H, Rho JG, Kim C, Tak H, Lee H, Ji E et al (2017) The miR-24-3p/p130Cas: a novel axis regulating the migration and invasion of cancer cells. Sci Rep 7:44847

CAS  PubMed  PubMed Central  Google Scholar 

Kawasaki K, Nojima S, Hijiki S, Tahara S, Ohshima K, Matsui T et al (2020) FAM111B enhances proliferation of KRAS-driven lung adenocarcinoma by degrading p16. Cancer Sci. 111(7):2635–46

CAS  PubMed  PubMed Central  Google Scholar 

Khella HWZ, Bakhet M, Allo G, Jewett MAS, Girgis AH, Latif A et al (2013) miR-192, miR-194 and miR-215: a convergent microRNA network suppressing tumor progression in renal cell carcinoma. Carcinogenesis 34(10):2231–2239. https://doi.org/10.1093/carcin/bgt184

CAS  Article  PubMed  Google Scholar 

Kilfoy BA, Zheng T, Holford TR, Han X, Ward MH, Sjodin A et al (2009) International patterns and trends in thyroid cancer incidence, 1973–2002. Cancer causes control 20(5):525–31

PubMed  Google Scholar 

Law CW, Chen Y, Shi W, Smyth GK (2014) voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15(2):R29. https://doi.org/10.1186/gb-2014-15-2-r29

CAS  Article  PubMed  PubMed Central  Google Scholar 

Li L, Kang L, Zhao W, Feng Y, Liu W, Wang T et al (2017) miR-30a-5p suppresses breast tumor growth and metastasis through inhibition of LDHA-mediated warburg effect. Cancer Lett 400:89–98. https://doi.org/10.1016/j.canlet.2017.04.034

CAS  Article  PubMed  Google Scholar 

Li R, Qu H, Wang S, Wei J, Zhang L, Ma R et al (2018) GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC. Bioinformatics 34(14):2515–7

PubMed  Google Scholar 

Liu X, Liu G, Lu Y, Shi Y (2020) Long non-coding RNA HOTAIR promotes cell viability, migration and invasion in thyroid cancer by sponging miR-17-5p. Neoplasma 67(2):229–37

CAS  PubMed  Google Scholar 

Lu NH, Wei CY, Qi FZ, Gu JY (2020) Hsa-let-7b suppresses cell proliferation by targeting UHRF1 in melanoma. Cancer Invest 38(1):52–60

PubMed  Google Scholar 

Nagaiah G, Hossain A, Mooney CJ, Parmentier J, Remick SC (2011) Anaplastic thyroid cancer: a review of epidemiology, pathogenesis, and treatment. J Oncol

Paci P, Colombo T, Farina L (2014) Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. BMC Syst Biol 8(1):83

PubMed  PubMed Central  Google Scholar 

Park CS, Kim SH, Jung SL, Kang BJ, Kim JY, Choi JJ et al (2010) Observer variability in the sonographic evaluation of thyroid nodules. J Clin Ultrasound 38(6):287–93

PubMed  Google Scholar 

Peng X, Zhang K, Ma L, Xu J, Chang W (2020) The role of long non-coding RNAs in thyroid cancer. Front Oncol 10:941

PubMed  PubMed Central  Google Scholar 

Quinn JJ, Chang HY (2016) Unique features of long non-coding RNA biogenesis and function. Nat Rev Genet 17(1):47–62

CAS  PubMed  Google Scholar 

Ramírez-Moya J, Wert-Lamas L, Acuña-Ruíz A, Fletcher A, Wert-Carvajal C, McCabe CJ et al (2022) Identification of an interactome network between lncRNAs and miRNAs in thyroid cancer reveals SPTY2D1-AS1 as a new tumor suppressor. Sci Rep 12(1):1–13

Google Scholar 

Robinson MD, Oshlack A (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 11(3):R25. https://doi.org/10.1186/gb-2010-11-3-r25

CAS  Article  PubMed  PubMed Central  Google Scholar 

Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26(1):139–140

CAS  PubMed  Google Scholar 

Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP (2011) A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146(3):353–8

CAS  PubMed  PubMed Central  Google Scholar 

Schriml LM, Mitraka E, Munro J, Tauber B, Schor M, Nickle L et al (2019) Human Disease Ontology 2018 update: classification, content and workflow expansion. Nucleic Acids Res. 47(D1):D955–D962

CAS  PubMed  Google Scholar 

See A, Iyer NG, Tan NC, Teo C, Ng J, Soo KC et al (2017) Distant metastasis as the sole initial manifestation of well-differentiated thyroid carcinoma. Europ Arch Oto-Rhino-Laryngol 274(7):2877–82

Google Scholar 

Seib CD, Sosa JA (2019) Evolving understanding of the epidemiology of thyroid cancer. Endocrinology and Metabolism Clinics. 48(1):23–35

PubMed  Google Scholar 

Seo D, Kim D, Chae Y, Kim W.( 2020) The ceRNA network of lncRNA and miRNA in lung cancer. Genomics Informa 18(4)

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D et al (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11):2498–504

CAS  PubMed  PubMed Central  Google Scholar 

Su K, Wang N, Shao Q, Liu H, Zhao B, Ma S (2021) The role of a ceRNA regulatory network based on lncRNA MALAT1 site in cancer progression. Biomed Pharmacother 137:111389

CAS  PubMed  Google Scholar 

Sun H, Liu K, Huang J, Sun Q, Shao C, Luo J et al (2019) FAM111B, a direct target of p53, promotes the malignant process of lung adenocarcinoma. Onco Targets Ther 12:2829

CAS  PubMed  PubMed Central  Google Scholar 

Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A et al (2021) Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 71(3):209–49

PubMed  Google Scholar 

Tam AA, Ozdemir D, Aydı