Flemming, H.-C. & Wuertz, S. Bacteria and archaea on Earth and their abundance in biofilms. Nat. Rev. Microbiol. 17, 247–260 (2019).
CAS PubMed Article Google Scholar
Inagaki, F. et al. Exploring deep microbial life in coal-bearing sediment down to ~2.5 km below the ocean floor. Science 349, 420–424 (2015).
CAS PubMed Article Google Scholar
Bar-On, Y. M., Phillips, R. & Milo, R. The biomass distribution on Earth. Proc. Natl Acad. Sci. USA 115, 6506–6511 (2018).
CAS PubMed PubMed Central Article Google Scholar
D’Hondt, K. et al. Microbiome innovations for a sustainable future. Nat. Microbiol. 6, 138–142 (2021).
PubMed Article CAS Google Scholar
Lloyd, K. G., Steen, A. D., Ladau, J., Yin, J. & Crosby, L. Phylogenetically novel uncultured microbial cells dominate earth microbiomes. mSystems 3, e00055-18 (2018).
PubMed PubMed Central Article Google Scholar
Lewis, W. H., Tahon, G., Geesink, P., Sousa, D. Z. & Ettema, T. J. G. Innovations to culturing the uncultured microbial majority. Nat. Rev. Microbiol. 19, 225–240 (2021).
CAS PubMed Article Google Scholar
Nayfach, S. et al. A genomic catalog of Earth’s microbiomes. Nat. Biotechnol. 39, 499–509 (2021).
CAS PubMed Article Google Scholar
Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431–437 (2013).
CAS PubMed Article Google Scholar
Hugenholtz, P. Exploring prokaryotic diversity in the genomic era. Genome Biol. 3, REVIEWS0003 (2002).
PubMed PubMed Central Article Google Scholar
Engelen, B. & Imachi, H. Cultivation of subseafloor prokaryotic life in developments in marine geology. In Earth and Life Processes Discovered from Subseafloor Environment. Vol. 7 (eds. Stein, R., Blackman, D., Inagaki, F. & Larsen, H.-L.) 197–209 (Elsevier, 2014).
Baker, B. J., Appler, K. E. & Gong, X. New microbial biodiversity in marine sediments. Annu. Rev. Mar. Sci. 13, 161–175 (2021).
Hoshino, T. et al. Global diversity of microbial communities in marine sediment. Proc. Natl Acad. Sci. USA 117, 27587–27597 (2020).
CAS PubMed PubMed Central Article Google Scholar
Tahon, G., Geesink, P. & Ettema, T. J. G. Expanding archaeal diversity and phylogeny: past, present, and future. Annu. Rev. Microbiol. 75, 359–381 (2021).
PubMed Article CAS Google Scholar
Bhattarai, S., Cassarini, C. & Lens, P. N. L. Physiology and distribution of archaeal methanotrophs that couple anaerobic oxidation of methane with sulfate reduction. Microbiol. Mol. Biol. Rev. 83, e00074-18 (2019).
PubMed PubMed Central Article Google Scholar
Krukenberg, V. et al. Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia. Environ. Microbiol. 20, 1651–1666 (2018).
CAS PubMed PubMed Central Article Google Scholar
Wegener, G., Krukenberg, V., Ruff, S. E., Kellermann, M. Y. & Knittel, K. Metabolic capabilities of microorganisms involved in and associated with the anaerobic oxidation of methane. Front. Microbiol. 7, 46 (2016).
PubMed PubMed Central Article Google Scholar
Agrawal, L. K. et al. Treatment of raw sewage in a temperate climate using a UASB reactor and the hanging sponge cubes process. Water Sci. Technol. 36, 433–440 (1997).
Tyagi, V. K. et al. Future perspectives of energy saving down-flow hanging sponge (DHS) technology for wastewater valorization—a review. Rev. Environ. Sci. Biotechnol. 20, 389–418 (2021).
Namita Maharjan, N. et al. Downflow hanging sponge system: a self-sustaining option for wastewater treatment. In Wastewater Treatment (IntechOpen, London, UK, 2020) Available at https://www.intechopen.com/online-first/74120
Nurmiyanto, A. & Ohashi, A. Downflow hanging sponge (DHS) reactor for wastewater treatment—a short review. MATEC Web Conf. 280, 05004 (2019).
Hatamoto, M., Okubo, T., Kubota, K. & Yamaguchi, T. Characterization of downflow hanging sponge reactors with regard to structure, process function, and microbial community compositions. Appl. Microbiol. Biotechnol. 102, 10345–10352 (2018).
CAS PubMed Article Google Scholar
Tandukar, M., Uemura, S., Ohashi, A. & Harada, H. Combining UASB and the ‘fourth generation’ down-flow hanging sponge reactor for municipal wastewater treatment. Water Sci. Technol. 53, 209–218 (2006).
CAS PubMed Article Google Scholar
Chuang, H.-P. et al. Microbial community that catalyzes partial nitrification at low oxygen atmosphere as revealed by 16S rRNA and amoA genes. J. Biosci. Bioeng. 104, 525–528 (2007).
CAS PubMed Article Google Scholar
Imachi, H. et al. Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor. ISME J. 5, 1913–1925 (2011).
CAS PubMed PubMed Central Article Google Scholar
Aoki, M. et al. A long-term cultivation of an anaerobic methane-oxidizing microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor. PLoS ONE 9, e105356 (2014).
PubMed PubMed Central Article CAS Google Scholar
Kato, S. et al. Biotic manganese oxidation coupled with methane oxidation using a continuous-flow bioreactor system under marine conditions. Water Sci. Technol. 76, 1781–1795 (2017).
CAS PubMed Article Google Scholar
Imachi, H. et al. Cultivable microbial community in 2-km-deep, 20-million-year-old subseafloor coalbeds through ~1000 days anaerobic bioreactor cultivation. Sci. Rep. 9, 2305 (2019).
PubMed PubMed Central Article CAS Google Scholar
Imachi, H. et al. Pelolinea submarina gen. nov., sp. nov., an anaerobic, filamentous bacterium of the phylum Chloroflexi isolated from subseafloor sediment. Int. J. Syst. Evol. Microbiol. 64, 812–818 (2014).
CAS PubMed Article Google Scholar
Imachi, H. et al. Sedimentibacter acidaminivorans sp. nov., an anaerobic, amino-acid-utilizing bacterium isolated from marine subsurface sediment. Int. J. Syst. Evol. Microbiol. 66, 1293–1300 (2016).
CAS PubMed Article Google Scholar
Imachi, H. et al. Isolation of an archaeon at the prokaryote-eukaryote interface. Nature 577, 519–525 (2020).
CAS PubMed PubMed Central Article Google Scholar
Miyazaki, M. et al. Sphaerochaeta multiformis sp. nov., an anaerobic, psychrophilic bacterium isolated from subseafloor sediment, and emended description of the genus Sphaerochaeta. Int. J. Syst. Evol. Microbiol. 64, 4147–4154 (2014).
PubMed Article CAS Google Scholar
Miyazaki, M. et al. Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment, and emended description of the genus Spirochaeta. Int. J. Syst. Evol. Microbiol. 64, 2798–2804 (2014).
CAS PubMed Article Google Scholar
Nakahara, N. et al. Aggregatilinea lenta gen. nov., sp. nov., a slow-growing, facultatively anaerobic bacterium isolated from subseafloor sediment, and proposal of the new order Aggregatilineales ord. nov. within the class Anaerolineae of the phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 69, 1185–1194 (2019).
CAS PubMed Article Google Scholar
Spang, A. et al. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature 521, 173–179 (2015).
CAS PubMed PubMed Central Article Google Scholar
Zaremba-Niedzwiedzka, K. et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature 541, 353–358 (2017).
CAS PubMed Article Google Scholar
Liu, Y. et al. Expanded diversity of Asgard archaea and their relationships with eukaryotes. Nature 593, 553–557 (2021).
CAS PubMed Article Google Scholar
Ruff, S. E. et al. Global dispersion and local diversification of the methane seep microbiome. Proc. Natl Acad. Sci. USA 112, 4015–4020 (2015).
CAS PubMed PubMed Central Article Google Scholar
Chadwick, G. et al. Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea. PLoS Biol. 20, e3001508 (2022).
PubMed PubMed Central Article Google Scholar
Cario, A., Oliver, G. C. & Rogers, K. L. Exploring the deep marine biosphere: challenges, innovations, and opportunities. Front. Earth Sci. 7, 225 (2019).
Jørgensen, B. B. & Boetius, A. Feast and famine—microbial life in the deep-sea bed. Nat. Rev. Microbiol. 5, 770–781 (2007).
PubMed Article CAS Google Scholar
Hoehler, T. M. & Jørgensen, B. B. Microbial life under extreme energy limitation. Nat. Rev. Microbiol. 11, 83–94 (2013).
留言 (0)