Clauset A, Newman ME and Moore C 2004 Finding community structure in very large networks. Phys. Rev. E 70 066111

Article  Google Scholar 

Cloutier M and Wang E 2011 Dynamic modeling and analysis of cancer cellular network motifs. Integr. Biol. 3 724–732

CAS  Article  Google Scholar 

Fortunato S 2010 Community detection in graphs. Phys. Rep. 486 75–174

Article  Google Scholar 

Futreal AP, Coin L, Marshall M, et al. 2006 A census of human cancer genes. Nat. Rev. Cancer 4 177–183

Article  Google Scholar 

Goh KI, Cusick ME, Valle D, et al. 2007 The human disease network. Proc. Natl. Acad. Sci. USA 104 8685–8690

CAS  Article  Google Scholar 

Gong X, Wu R, Zhang Y, et al. 2010 Extracting consistent knowledge from highly inconsistent cancer gene data sources. BMC Bioinform. 11 76

Article  Google Scholar 

Good BH, De Montjoye YA and Clauset A 2010 Performance of modularity maximization in practical contexts. Phys. Rev. E 81 046106

Article  Google Scholar 

Guimera R and Amaral LAN 2005 Cartography of complex networks: modules and universal roles. J. Stat. Mech.. https://doi.org/10.1088/1742-5468/2005/02/P02001

Article  PubMed  PubMed Central  Google Scholar 

Guimera R, Pardo MS and Amaral LAN 2007 Classes of complex networks defined by role-to-role connectivity profiles. Nat. Phys. 3 63–69

CAS  Article  Google Scholar 

Hamosh A, Scott AF, Amberger JS, Bocchini CA and McKusick VA 2005 Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 33 D514–D517

CAS  Article  Google Scholar 

Hartwell LH, Hopfield JJ, Leibler S and Murray AW 1999 From molecular to modular cell biology. Nature 402 C47–C52

CAS  Article  Google Scholar 

Hornberg JJ, Bruggeman FJ, Westerhoff HV and Lankelma J 2006 Cancer: a systems biology disease. Biosystems 83 81–90

CAS  Article  Google Scholar 

Kreeger PK and Lauffenburger DA 2010 Cancer systems biology: a network modeling perspective. Carcinogenesis 31 2–8

CAS  Article  Google Scholar 

Lancichinetti A and Fortunato S 2009 Community detection algorithms: a comparative analysis. Phys. Rev. E 80 056117

Article  Google Scholar 

Lancichinetti A and Fortunato S 2012 Consensus clustering in complex networks. Sci. Rep. 2 336

Article  Google Scholar 

Lee JA and Verleysen M 2007 Nonlinear dimensionality reduction (New York: Springer)

Mariotto AB, Noone AM, Howlader N, et al. 2014 Cancer survival: an overview of measures, uses, and interpretation. J. Nat. Cancer Inst. Monogr. 2014 145–186

Article  Google Scholar 

Milo R, Shen-Orr S, Itzkovitz S, et al. 2002 Network motifs: simple building blocks of complex networks. Science 298 824–827

CAS  Article  Google Scholar 

Mukherjee S 2010 The emperor of all maladies: A biography of cancer (New York: Scribner)

Newman MEJ 2004 Detecting community structure in networks. Eur. Phys. J. B 38 321–330

CAS  Article  Google Scholar 

Newman MEJ 2006 Modularity and community structure in networks. Proc. Natl. Acad. Sci. USA 103 8577–8582

CAS  Article  Google Scholar 

Newman MEJ and Girvan M 2004 Finding and evaluating community structure in networks. Phys. Rev. E 69 026113

CAS  Article  Google Scholar 

Porter MA, Onnela JP and Mucha PJ 2009 Communities in Networks. Notices AMS 56 1082–1097

Google Scholar 

Prasad TSK, Goel R, Kandasamy K, et al. 2009 Human Protein Reference Database - 2009 update. Nucleic Acids Res. 37 D767–D772

CAS  Article  Google Scholar 

Rosvall M and Bergstrom CT 2008 Maps of random walks on complex networks reveal community structure. Proc. Natl. Acad. Sci. USA 105 1118–1123

CAS  Article  Google Scholar 

Rosvall M and Bergstrom CT 2010 Mapping change in large networks. PLoS One 5 e8694

Article  Google Scholar 

Schaefer CF, Anthony K, Krupa S, et al. 2009 PID: the pathway interaction database. Nucleic Acids Res. 37 D674–D679

CAS  Article  Google Scholar 

Schaub MT, Delvenne JC, Rosvall M and Lambiotte R 2017 The many facets of community detection in complex networks. Appl. Netw. Sci. 2 4

Article  Google Scholar 

WHO 2021 Cancer fact sheet https://www.who.int/en/news-room/fact-sheets/detail/cancer