Comparison of two polygenic risk scores to identify non-monogenic primary hypocholesterolemias in a large cohort of Italian hypocholesterolemic subjects

ElsevierVolume 16, Issue 4, July–August 2022, Pages 530-537Journal of Clinical LipidologyHighlights•

Primary hypobetalipoproteinemia (HBL) can be either monogenic or polygenic.

We compared two polygenic risk scores (PRS1-PRS2) in primary HBL.

Among 170 subjects with primary HBL, 37% had a polygenic origin.

Prevalence of liver steatosis did not differ in monogenic and polygenic HBL.

Only PRS1 is effective in detecting polygenic HBL.

Background

Primary Hypobetalipoproteinemias (HBL) are a group of dominant and recessive monogenic genetic disorders caused by mutations in APOB, PCSK9, ANGPTL3, MTTP, Sar1b genes and characterized by plasma levels of total cholesterol (TC), low density lipoprotein-cholesterol (LDL-C) and apolipoprotein B (apoB) below the 5th percentile of the distribution in a given population. Mutations in the candidate genes account only for a small proportion of subjects with HBL suggesting a role for a polygenic contribution to the low cholesterol phenotype.

Objective

To explore the complex genetic architecture of HBL we compared two polygenic risk scores in order to assess the role of the polygenic burden and the differences in the clinical phenotype between monogenic and polygenic HBL; we studied a cohort of 170 subjects with primary HBL referred over a 25-year period to 2 Italian reference centers have been studied.

Methods

The genetic analyses have been based on: Sanger sequencing, in-house NGS customized panel and two scores, PRS1 and PRS2 for the polygenic burden.

Results

Sixty 60 (35%) and 63 (37%) subjects had a monogenic and polygenic HBL respectively. LDL-C plasma levels were significantly lower in monogenic HBL (30.87 ± 3.12 mg/dl) compared with the non-monogenic HBL (42.80 ± 2.18 mg/dl) (p<0.002) with no differences in the percentage of fatty liver.

Conclusion

Only PRS1 is effective in detecting polygenic HBL while PRS2 does not improve the polygenic diagnosis.

Keywords

Hypobetalipoproteinemia

Mutations

Polygenic risk score

Panel based NGS sequencing

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© 2022 National Lipid Association. Published by Elsevier Inc. All rights reserved.

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