Genome analysis and virulence gene expression profile of a multi drug resistant Salmonella enterica serovar Typhimurium ms202

Hernandez-Reyes C, Schikora A. Salmonella, a cross-kingdom pathogen infecting humans and plants. FEMS Microbiol Lett. 2013;343(1):1–7.

CAS  PubMed  Google Scholar 

Majowicz SE, Musto J, Scallan E, Angulo FJ, Kirk M, O’Brien SJ, et al. The global burden of nontyphoidal Salmonella gastroenteritis. Clin Infect Dis. 2010;50(6):882–9.

PubMed  Google Scholar 

GBDN-TSID Collaborators. The global burden of non-typhoidal salmonella invasive disease: a systematic analysis for the Global Burden of Disease Study 2017. Lancet Infect Dis. 2019;19(12):1312–24.

Google Scholar 

Das S, Ray S, Ryan D, Sahu B, Suar M. Identification of a novel gene in ROD9 island of Salmonella Enteritidis involved in the alteration of virulence-associated genes expression. Virulence. 2018;9(1):348–62.

CAS  PubMed  PubMed Central  Google Scholar 

Saleh S, Van Puyvelde S, Staes A, Timmerman E, Barbe B, Jacobs J, et al. Salmonella Typhi, Paratyphi A, Enteritidis and Typhimurium core proteomes reveal differentially expressed proteins linked to the cell surface and pathogenicity. PLoS Negl Trop Dis. 2019;13(5): e0007416.

CAS  PubMed  PubMed Central  Google Scholar 

Grimont PA, Weill F-XJWccfr, Salmonella ro. Antigenic formulae of the Salmonella serovars. 2007;9:1-166

Singh B, Singh V, Agarwal M, Sharma G, Chandra M. Haemolysins of Salmonella, their role in pathogenesis and subtyping of Salmonella serovars. Indian J Exp Biol. 2004;42(3):303.

CAS  PubMed  Google Scholar 

Mir IA, Kashyap SK, Maherchandani SJAPJoTB. Isolation, serotype diversity and antibiogram of Salmonella enterica isolated from different species of poultry in India. Asian Pac J Trop Biomed. 2015;5(7):561–7.

Google Scholar 

Rabsch W, Andrews HL, Kingsley RA, Prager R, Tschape H, Adams LG, et al. Salmonella enterica serotype Typhimurium and its host-adapted variants. Infect Immun. 2002;70(5):2249–55.

CAS  PubMed  PubMed Central  Google Scholar 

Carden S, Okoro C, Dougan G, Monack DJP. Non-typhoidal Salmonella Typhimurium ST313 isolates that cause bacteremia in humans stimulate less inflammasome activation than ST19 isolates associated with gastroenteritis. Pathogens Dis. 2015. https://doi.org/10.1093/femspd/ftu023.

Article  Google Scholar 

Wemyss MA, Pearson JS. Host cell death responses to non-typhoidal salmonella infection. Front Immunol. 2019;10:1758.

CAS  PubMed  PubMed Central  Google Scholar 

Jacob JJ, Solaimalai D, Muthuirulandi Sethuvel DP, Rachel T, Jeslin P, Anandan S, et al. A nineteen-year report of serotype and antimicrobial susceptibility of enteric non-typhoidal Salmonella from humans in Southern India: changing facades of taxonomy and resistance trend. Gut Pathog. 2020;12:49.

CAS  PubMed  PubMed Central  Google Scholar 

Hensel M. Salmonella pathogenicity island 2. Mol Microbiol. 2000;36(5):1015–23.

CAS  PubMed  Google Scholar 

Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884–90.

PubMed  PubMed Central  Google Scholar 

Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaSci. 2012;1(1):2047-217X-1–18.

Google Scholar 

Trujillo S, Keys CE, Brown EW. Evaluation of the taxonomic utility of six-enzyme pulsed-field gel electrophoresis in reconstructing Salmonella subspecies phylogeny. Infect Genet Evol. 2011;11(1):92–102.

CAS  PubMed  Google Scholar 

Desai PT, Porwollik S, Long F, Cheng P, Wollam A, Bhonagiri-Palsikar V, et al. Evolutionary Genomics of Salmonella enterica Subspecies. mBio. 2013;4(2):e00579.

PubMed  PubMed Central  Google Scholar 

Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, et al. Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp enterica inferred from genome-wide reference-free SNP characters. Genome Biol Evol. 2013;5(11):2109–23.

CAS  PubMed  PubMed Central  Google Scholar 

Shahane V, Muley V, Kagal A, Bharadwaj R. Non-typhoid salmonellosis: emerging infection in Pune? Indian J Med Microbiol. 2007;25(2):173–4.

CAS  PubMed  Google Scholar 

Hohmann EL. Nontyphoidal salmonellosis. Clin Infect Dis. 2001;32(2):263–9.

CAS  PubMed  Google Scholar 

Laupland KB, Schonheyder HC, Kennedy KJ, Lyytikainen O, Valiquette L, Galbraith J, et al. Salmonella enterica bacteraemia: a multi-national population-based cohort study. BMC Infect Dis. 2010;10:95.

PubMed  PubMed Central  Google Scholar 

Hsu CH, Li C, Hoffmann M, McDermott P, Abbott J, Ayers S, et al. Comparative genomic analysis of virulence, antimicrobial resistance, and plasmid profiles of Salmonella Dublin isolated from sick cattle, retail beef, and humans in the United States. Microb Drug Resist. 2019;25(8):1238–49.

CAS  PubMed  Google Scholar 

Porwollik S, Wong RM, McClelland M. Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci USA. 2002;99(13):8956–61.

CAS  PubMed  PubMed Central  Google Scholar 

Chan K, Baker S, Kim CC, Detweiler CS, Dougan G, Falkow S. Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray. J Bacteriol. 2003;185(2):553–63.

CAS  PubMed  PubMed Central  Google Scholar 

Baum D, Shaw K, Hoch P, Stephenson A. Experimental and molecular approaches to plant biosystematics. Syst Bot. 1995;20(4):560–73.

Google Scholar 

Ahmer BM, Tran M, Heffron FJJ. The virulence plasmid of Salmonella typhimurium is self-transmissible. J Bacteriol. 1999;181(4):1364–8.

CAS  PubMed  PubMed Central  Google Scholar 

Rotger R, Casadesus J. The virulence plasmids of Salmonella. Int Microbiol. 1999;2(3):177–84.

CAS  PubMed  Google Scholar 

Montenegro MA, Morelli G, Helmuth R. Heteroduplex analysis of Salmonella virulence plasmids and their prevalence in isolates of defined sources. Microb Pathog. 1991;11(6):391–7.

CAS  PubMed  Google Scholar 

Fierer J, Krause M, Tauxe R, Guiney D. Salmonella typhimurium bacteremia: association with the virulence plasmid. J Infect Dis. 1992;166(3):639–42.

CAS  PubMed  Google Scholar 

Shin H, Lee JH, Kim H, Choi Y, Heu S, Ryu S. Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium. PLoS ONE. 2012;7(8): e43392.

CAS  PubMed  PubMed Central  Google Scholar 

Yoon H, Ansong C, Adkins JN, Heffron F. Discovery of Salmonella virulence factors translocated via outer membrane vesicles to murine macrophages. Infect Immun. 2011;79(6):2182–92.

CAS  PubMed  PubMed Central  Google Scholar 

Giner-Lamia J, Vinuesa P, Betancor L, Silva C, Bisio J, Soleto L, et al. Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256. BMC Genomics. 2019;20(1):99.

PubMed  PubMed Central  Google Scholar 

Li XZ, Nikaido H. Efflux-mediated drug resistance in bacteria: an update. Drugs. 2009;69(12):1555–623.

CAS  PubMed  PubMed Central  Google Scholar 

Buckley AM, Webber MA, Cooles S, Randall LP, La Ragione RM, Woodward MJ, et al. The AcrAB-TolC efflux system of Salmonella enterica serovar Typhimurium plays a role in pathogenesis. Cell Microbiol. 2006;8(5):847–56.

CAS  PubMed  Google Scholar 

Murakami S. Multidrug efflux transporter, AcrB–the pumping mechanism. Curr Opin Struct Biol. 2008;18(4):459–65.

CAS  PubMed  Google Scholar 

Quinn T, O’Mahony R, Baird AW, Drudy D, Whyte P, Fanning S. Multi-drug resistance in Salmonella enterica: efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters. Curr Drug Targets. 2006;7(7):849–60.

CAS  PubMed  Google Scholar 

Hardt WD, Urlaub H, Galan JE. A substrate of the centisome 63 type III protein secretion system of Salmonella typhimurium is encoded by a cryptic bacteriophage. Proc Natl Acad Sci USA. 1998;95(5):2574–9.

CAS  PubMed  PubMed Central  Google Scholar 

Figueroa-Bossi N, Uzzau S, Maloriol D, Bossi L. Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. Mol Microbiol. 2001;39(2):260–71.

CAS  PubMed  Google Scholar 

Switt AI, Sulakvelidze A, Wiedmann M, Kropinski AM, Wishart DS, Poppe C, et al. Salmonella phages and prophages: genomics, taxonomy, and applied aspects. Methods Mol Biol. 2015;1225:237–87.

CAS  PubMed  Google Scholar 

Worley J, Meng J, Allard MW, Brown EW, Timme RE. Salmonella enterica phylogeny based on whole-genome sequencing reveals two new clades and novel patterns of horizontally acquired genetic elements. mBio. 2018;9(6):e02303.

PubMed  PubMed Central  Google Scholar 

Hensel M. Evolution of pathogenicity islands of Salmonella enterica. Int J Med Microbiol. 2004;294(2–3):95–102.

CAS  PubMed  Google Scholar 

Suez J, Porwollik S, Dagan A, Marzel A, Schorr YI, Desai PT, et al. Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PLoS ONE. 2013;8(3): e58449.

CAS  PubMed  PubMed Central  Google Scholar 

Blondel CJ, Jimenez JC, Contreras I, Santiviago CA. Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics. 2009;10:354.

PubMed  PubMed Central  Google Scholar 

Raffatellu M,

留言 (0)

沒有登入
gif